PDB Chemical Component 9H9
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9H9
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C30 |
C01 |
1.532 |
1.528 |
C30 |
C29 |
1.507 |
1.534 |
C01 |
C02 |
1.488 |
1.505 |
C29 |
C28 |
1.542 |
1.528 |
O04 |
C03 |
1.224 |
1.219 |
C02 |
C03 |
1.456 |
1.411 |
C02 |
C27 |
1.360 |
1.357 |
C03 |
N05 |
1.440 |
1.348 |
C28 |
C27 |
1.529 |
1.506 |
C27 |
N26 |
1.379 |
1.339 |
N05 |
C06 |
1.388 |
1.361 |
N26 |
C06 |
1.318 |
1.315 |
C06 |
N07 |
1.367 |
1.369 |
N07 |
C08 |
1.461 |
1.470 |
N07 |
C25 |
1.479 |
1.469 |
C08 |
C09 |
1.508 |
1.533 |
C25 |
C24 |
1.538 |
1.533 |
C09 |
C10 |
1.518 |
1.524 |
C24 |
C10 |
1.510 |
1.523 |
C10 |
C23 |
1.549 |
1.540 |
C10 |
C11 |
1.466 |
1.510 |
C23 |
N19 |
1.489 |
1.480 |
F13 |
C12 |
1.293 |
1.350 |
C11 |
C12 |
1.393 |
1.382 |
C11 |
C18 |
1.406 |
1.391 |
C12 |
C14 |
1.427 |
1.385 |
N19 |
C18 |
1.396 |
1.401 |
N19 |
C20 |
1.494 |
1.469 |
C18 |
C17 |
1.399 |
1.394 |
O22 |
C21 |
1.403 |
1.429 |
C20 |
C21 |
1.560 |
1.529 |
C14 |
C15 |
1.398 |
1.384 |
C17 |
C15 |
1.417 |
1.381 |
C15 |
F16 |
1.306 |
1.351 |
C14 |
H1 |
1.080 |
1.080 |
C01 |
H2 |
1.100 |
1.091 |
C01 |
H3 |
1.100 |
1.090 |
C08 |
H4 |
1.099 |
1.090 |
C08 |
H5 |
1.100 |
1.089 |
C09 |
H6 |
1.099 |
1.091 |
C09 |
H7 |
1.100 |
1.090 |
C17 |
H8 |
1.080 |
1.080 |
C20 |
H9 |
1.100 |
1.090 |
C20 |
H10 |
1.100 |
1.091 |
C21 |
H11 |
1.100 |
1.090 |
C21 |
H12 |
1.100 |
1.091 |
C23 |
H13 |
1.100 |
1.091 |
C23 |
H14 |
1.100 |
1.090 |
C24 |
H15 |
1.100 |
1.089 |
C24 |
H16 |
1.100 |
1.090 |
C25 |
H17 |
1.100 |
1.090 |
C25 |
H18 |
1.100 |
1.090 |
C28 |
H19 |
1.100 |
1.090 |
C28 |
H20 |
1.100 |
1.090 |
C29 |
H21 |
1.100 |
1.089 |
C29 |
H22 |
1.100 |
1.090 |
C30 |
H23 |
1.100 |
1.091 |
C30 |
H24 |
1.100 |
1.090 |
N05 |
H25 |
1.000 |
0.970 |
O22 |
H26 |
0.950 |
0.967 |
Bond Angles for 9H9
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C30 |
C01 |
H2 |
109.3 |
109.3 |
C30 |
C01 |
H3 |
109.3 |
109.2 |
C30 |
C29 |
H21 |
109.3 |
109.7 |
C30 |
C29 |
H22 |
109.3 |
109.8 |
C01 |
C02 |
C03 |
118.1 |
118.1 |
C01 |
C02 |
C27 |
124.3 |
123.0 |
C02 |
C01 |
H2 |
109.3 |
109.2 |
C02 |
C01 |
H3 |
109.3 |
109.3 |
C29 |
C28 |
H19 |
108.4 |
109.3 |
C29 |
C28 |
H20 |
108.4 |
109.3 |
C03 |
C02 |
C27 |
117.5 |
118.9 |
C02 |
C03 |
N05 |
117.0 |
119.1 |
C02 |
C27 |
N26 |
123.2 |
119.6 |
C03 |
N05 |
C06 |
120.4 |
119.5 |
C03 |
N05 |
H25 |
119.8 |
120.3 |
C28 |
C27 |
N26 |
116.7 |
117.7 |
N05 |
C06 |
N07 |
120.4 |
119.5 |
C06 |
N07 |
C08 |
121.8 |
120.5 |
C06 |
N07 |
C25 |
123.3 |
120.7 |
N07 |
C08 |
H4 |
107.1 |
109.6 |
N07 |
C08 |
H5 |
107.1 |
109.8 |
N07 |
C25 |
H17 |
108.4 |
109.6 |
N07 |
C25 |
H18 |
108.4 |
109.7 |
C09 |
C08 |
H4 |
107.1 |
109.6 |
C09 |
C08 |
H5 |
107.1 |
109.5 |
C08 |
C09 |
H6 |
107.4 |
109.5 |
C08 |
C09 |
H7 |
107.4 |
109.5 |
C25 |
C24 |
H15 |
108.0 |
109.5 |
C25 |
C24 |
H16 |
107.9 |
109.5 |
C09 |
C10 |
C23 |
110.4 |
110.2 |
C11 |
C10 |
C23 |
102.3 |
103.5 |
C10 |
C23 |
N19 |
106.3 |
102.5 |
C10 |
C23 |
H13 |
110.3 |
110.8 |
C10 |
C23 |
H14 |
110.2 |
110.8 |
C10 |
C11 |
C12 |
127.6 |
131.9 |
C10 |
C11 |
C18 |
111.9 |
107.7 |
N19 |
C23 |
H13 |
110.3 |
110.8 |
N19 |
C23 |
H14 |
110.3 |
110.8 |
C12 |
C11 |
C18 |
120.5 |
120.4 |
C11 |
C12 |
C14 |
120.8 |
120.1 |
C11 |
C18 |
C17 |
119.6 |
119.2 |
C12 |
C14 |
C15 |
118.2 |
119.9 |
C12 |
C14 |
H1 |
120.9 |
120.0 |
N19 |
C20 |
H9 |
108.4 |
109.5 |
N19 |
C20 |
H10 |
108.4 |
109.5 |
C18 |
C17 |
H8 |
120.0 |
119.8 |
O22 |
C21 |
H11 |
109.8 |
109.5 |
O22 |
C21 |
H12 |
109.8 |
109.5 |
C21 |
C20 |
H9 |
108.4 |
109.5 |
C21 |
C20 |
H10 |
108.4 |
109.4 |
C20 |
C21 |
H11 |
109.8 |
109.5 |
C20 |
C21 |
H12 |
109.8 |
109.4 |
C14 |
C15 |
F16 |
118.6 |
119.9 |
C15 |
C14 |
H1 |
120.9 |
120.1 |
C17 |
C15 |
F16 |
120.5 |
119.9 |
H2 |
C01 |
H3 |
109.5 |
109.3 |
H4 |
C08 |
H5 |
109.5 |
109.6 |
H6 |
C09 |
H7 |
109.5 |
109.5 |
H9 |
C20 |
H10 |
109.5 |
109.4 |
H11 |
C21 |
H12 |
109.5 |
109.4 |
H13 |
C23 |
H14 |
109.5 |
110.9 |
H15 |
C24 |
H16 |
109.5 |
109.5 |
H17 |
C25 |
H18 |
109.5 |
109.6 |
H19 |
C28 |
H20 |
109.5 |
109.2 |
H21 |
C29 |
H22 |
109.4 |
109.7 |
H23 |
C30 |
H24 |
109.4 |
109.7 |
Torsion Angles for 9H9
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C02 |
C01 |
C30 |
H2 |
239.9 |
120.2 |
C02 |
C01 |
C30 |
H3 |
120.1 |
239.7 |
H2 |
C01 |
C30 |
H3 |
240.2 |
119.5 |
C29 |
C30 |
C01 |
H2 |
175.8 |
290.4 |
C29 |
C30 |
C01 |
H3 |
295.6 |
170.9 |
C30 |
C29 |
C28 |
H19 |
160.0 |
290.7 |
C30 |
C29 |
C28 |
H20 |
278.8 |
171.3 |
H21 |
C29 |
C30 |
H22 |
240.3 |
120.7 |
C30 |
C01 |
C02 |
H2 |
120.1 |
239.7 |
C30 |
C01 |
C02 |
H3 |
239.9 |
120.3 |
C03 |
C02 |
C01 |
C27 |
178.3 |
180.0 |
C01 |
C02 |
C03 |
N05 |
180.4 |
179.6 |
C01 |
C02 |
C27 |
N26 |
178.9 |
180.6 |
H2 |
C01 |
C02 |
H3 |
119.8 |
240.5 |
C29 |
C28 |
C27 |
N26 |
173.0 |
162.4 |
H19 |
C28 |
C29 |
H20 |
241.3 |
119.4 |
O04 |
C03 |
N05 |
H25 |
0.1 |
0.1 |
C01 |
C02 |
C03 |
C27 |
181.5 |
180.0 |
C03 |
C02 |
C01 |
H2 |
35.5 |
282.6 |
C03 |
C02 |
C01 |
H3 |
275.7 |
42.0 |
C03 |
C02 |
C27 |
N26 |
0.6 |
0.6 |
C02 |
C03 |
N05 |
C06 |
1.5 |
0.0 |
C02 |
C03 |
N05 |
H25 |
181.5 |
180.0 |
C01 |
C02 |
C27 |
C03 |
178.4 |
180.0 |
C27 |
C02 |
C01 |
H2 |
217.1 |
102.6 |
C27 |
C02 |
C01 |
H3 |
97.3 |
222.1 |
C27 |
C02 |
C03 |
N05 |
358.9 |
359.6 |
C28 |
C27 |
C02 |
N26 |
178.7 |
180.4 |
N05 |
C03 |
C02 |
C27 |
358.9 |
359.6 |
C03 |
N05 |
C06 |
N07 |
180.9 |
180.2 |
C02 |
C27 |
C28 |
N26 |
181.3 |
179.6 |
C03 |
N05 |
C06 |
H25 |
180.0 |
180.0 |
N05 |
C06 |
N07 |
C08 |
353.9 |
174.4 |
N05 |
C06 |
N07 |
C25 |
180.6 |
354.5 |
C02 |
C27 |
N26 |
C06 |
359.8 |
359.7 |
C06 |
N07 |
C08 |
H4 |
272.4 |
6.1 |
C06 |
N07 |
C08 |
H5 |
29.8 |
245.6 |
C06 |
N07 |
C25 |
H17 |
336.7 |
114.4 |
C06 |
N07 |
C25 |
H18 |
95.4 |
354.0 |
C06 |
N07 |
C08 |
C25 |
186.1 |
180.1 |
C09 |
C08 |
N07 |
H4 |
238.7 |
119.7 |
C09 |
C08 |
N07 |
H5 |
121.3 |
240.2 |
N07 |
C08 |
C09 |
H6 |
157.0 |
293.7 |
N07 |
C08 |
C09 |
H7 |
274.6 |
173.7 |
H4 |
C08 |
N07 |
H5 |
242.6 |
120.4 |
C06 |
N07 |
C25 |
C08 |
173.8 |
179.9 |
C25 |
N07 |
C08 |
H4 |
86.3 |
186.0 |
C25 |
N07 |
C08 |
H5 |
203.6 |
65.5 |
N07 |
C25 |
C24 |
H15 |
68.5 |
186.4 |
N07 |
C25 |
C24 |
H16 |
186.8 |
66.4 |
H17 |
C25 |
N07 |
H18 |
241.2 |
120.4 |
C06 |
N07 |
C08 |
C09 |
151.1 |
125.8 |
N07 |
C08 |
C09 |
H4 |
121.3 |
240.3 |
N07 |
C08 |
C09 |
H5 |
238.7 |
120.0 |
C08 |
C09 |
C10 |
C23 |
75.0 |
62.9 |
H4 |
C08 |
C09 |
H5 |
117.4 |
239.7 |
H6 |
C09 |
C08 |
H7 |
242.4 |
120.0 |
C06 |
N07 |
C25 |
C24 |
216.1 |
234.2 |
H15 |
C24 |
C25 |
H16 |
241.7 |
120.0 |
C11 |
C10 |
C09 |
C23 |
115.6 |
113.9 |
C09 |
C10 |
C23 |
N19 |
134.7 |
93.3 |
C09 |
C10 |
C23 |
H13 |
254.2 |
211.5 |
C09 |
C10 |
C23 |
H14 |
15.2 |
335.0 |
C09 |
C10 |
C11 |
C18 |
233.0 |
257.6 |
C24 |
C10 |
C23 |
N19 |
252.6 |
216.4 |
C24 |
C10 |
C23 |
H13 |
12.1 |
334.6 |
C24 |
C10 |
C23 |
H14 |
133.1 |
98.1 |
C23 |
C10 |
C11 |
C12 |
173.1 |
195.7 |
C23 |
C10 |
C11 |
C18 |
353.0 |
15.6 |
N19 |
C23 |
C10 |
H13 |
240.5 |
241.8 |
N19 |
C23 |
C10 |
H14 |
119.5 |
118.3 |
H13 |
C23 |
C10 |
H14 |
239.0 |
236.5 |
C09 |
C10 |
C11 |
C23 |
239.9 |
241.9 |
C11 |
C10 |
C23 |
N19 |
10.9 |
334.9 |
C11 |
C10 |
C23 |
H13 |
130.5 |
93.1 |
C11 |
C10 |
C23 |
H14 |
251.4 |
216.6 |
C12 |
C11 |
C10 |
C18 |
180.1 |
180.1 |
C10 |
C11 |
C12 |
C14 |
180.1 |
179.6 |
C10 |
C11 |
C18 |
C17 |
179.7 |
180.5 |
C10 |
C23 |
N19 |
H13 |
119.5 |
118.2 |
C10 |
C23 |
N19 |
H14 |
240.5 |
241.7 |
C23 |
N19 |
C20 |
H9 |
210.5 |
69.9 |
C23 |
N19 |
C20 |
H10 |
329.2 |
310.0 |
H13 |
C23 |
N19 |
H14 |
121.0 |
123.5 |
F13 |
C12 |
C14 |
H1 |
360.0 |
0.0 |
C12 |
C11 |
C10 |
C23 |
173.1 |
195.7 |
C10 |
C11 |
C12 |
C18 |
179.9 |
179.9 |
C12 |
C11 |
C18 |
C17 |
359.6 |
0.4 |
C11 |
C12 |
C14 |
C15 |
359.9 |
0.0 |
C11 |
C12 |
C14 |
H1 |
179.9 |
180.1 |
C18 |
C11 |
C10 |
C23 |
353.0 |
15.6 |
C10 |
C11 |
C18 |
C12 |
180.1 |
180.1 |
C18 |
C11 |
C12 |
C14 |
0.2 |
359.7 |
C11 |
C18 |
C17 |
H8 |
180.4 |
179.8 |
C14 |
C12 |
C11 |
C18 |
0.2 |
359.7 |
C12 |
C14 |
C15 |
F16 |
179.8 |
180.1 |
C15 |
C14 |
C12 |
H1 |
180.0 |
180.0 |
C10 |
C23 |
N19 |
C18 |
348.4 |
26.8 |
N19 |
C18 |
C17 |
H8 |
0.1 |
359.3 |
C10 |
C23 |
N19 |
C20 |
178.5 |
265.0 |
C21 |
C20 |
N19 |
H9 |
239.4 |
120.1 |
C21 |
C20 |
N19 |
H10 |
120.6 |
240.0 |
N19 |
C20 |
C21 |
H11 |
236.5 |
185.0 |
N19 |
C20 |
C21 |
H12 |
116.1 |
305.0 |
H9 |
C20 |
N19 |
H10 |
241.3 |
120.0 |
C18 |
C17 |
C15 |
F16 |
180.0 |
180.0 |
O22 |
C21 |
C20 |
H9 |
235.7 |
185.0 |
O22 |
C21 |
C20 |
H10 |
117.0 |
305.0 |
C20 |
C21 |
O22 |
H11 |
240.2 |
120.1 |
C20 |
C21 |
O22 |
H12 |
119.8 |
240.0 |
H11 |
C21 |
O22 |
H12 |
239.6 |
119.9 |
N19 |
C20 |
C21 |
H9 |
120.6 |
239.9 |
N19 |
C20 |
C21 |
H10 |
239.4 |
120.0 |
O22 |
C21 |
C20 |
H11 |
119.8 |
240.0 |
O22 |
C21 |
C20 |
H12 |
240.2 |
120.0 |
H9 |
C20 |
C21 |
H10 |
118.7 |
240.1 |
H11 |
C21 |
C20 |
H12 |
120.4 |
240.0 |
C12 |
C14 |
C15 |
H1 |
180.0 |
180.0 |
C17 |
C15 |
C14 |
F16 |
180.3 |
180.1 |
C11 |
C18 |
C17 |
C15 |
0.4 |
359.8 |
C14 |
C15 |
C17 |
F16 |
179.7 |
179.9 |
C17 |
C15 |
C14 |
H1 |
180.1 |
180.2 |
F16 |
C15 |
C14 |
H1 |
359.8 |
0.1 |
C12 |
C14 |
H1 |
C15 |
180.0 |
180.0 |
H1 |
C14 |
C15 |
F16 |
359.8 |
0.1 |
C30 |
C01 |
H2 |
H3 |
119.7 |
240.5 |
H2 |
C01 |
C02 |
C03 |
35.5 |
282.6 |
H2 |
C01 |
C02 |
C27 |
217.1 |
102.6 |
C02 |
C01 |
H2 |
H3 |
240.3 |
119.5 |
C30 |
C01 |
H3 |
H2 |
240.3 |
119.5 |
H3 |
C01 |
C02 |
C03 |
275.7 |
42.0 |
H3 |
C01 |
C02 |
C27 |
97.3 |
222.1 |
C02 |
C01 |
H3 |
H2 |
119.7 |
240.6 |
N07 |
C08 |
H4 |
H5 |
115.8 |
239.4 |
C09 |
C08 |
H4 |
H5 |
244.2 |
120.2 |
H4 |
C08 |
C09 |
H6 |
35.7 |
53.5 |
H4 |
C08 |
C09 |
H7 |
153.3 |
293.4 |
N07 |
C08 |
H5 |
H4 |
244.2 |
120.4 |
C09 |
C08 |
H5 |
H4 |
115.8 |
239.7 |
H5 |
C08 |
C09 |
H6 |
278.3 |
173.8 |
H5 |
C08 |
C09 |
H7 |
35.9 |
53.7 |
H6 |
C09 |
C08 |
H4 |
35.7 |
53.5 |
H6 |
C09 |
C08 |
H5 |
278.3 |
173.8 |
C08 |
C09 |
H6 |
H7 |
116.2 |
239.9 |
H6 |
C09 |
C10 |
C23 |
313.8 |
182.9 |
H7 |
C09 |
C08 |
H4 |
153.3 |
293.4 |
H7 |
C09 |
C08 |
H5 |
35.9 |
53.7 |
C08 |
C09 |
H7 |
H6 |
243.7 |
120.1 |
H7 |
C09 |
C10 |
C23 |
196.2 |
302.9 |
H8 |
C17 |
C15 |
F16 |
360.0 |
0.0 |
N19 |
C20 |
H9 |
H10 |
118.1 |
240.0 |
C21 |
C20 |
H9 |
H10 |
242.0 |
119.9 |
H9 |
C20 |
C21 |
H11 |
115.9 |
305.1 |
H9 |
C20 |
C21 |
H12 |
355.5 |
65.0 |
N19 |
C20 |
H10 |
H9 |
242.0 |
120.0 |
C21 |
C20 |
H10 |
H9 |
118.0 |
240.0 |
H10 |
C20 |
C21 |
H11 |
357.2 |
65.0 |
H10 |
C20 |
C21 |
H12 |
236.8 |
185.0 |
O22 |
C21 |
H11 |
H12 |
120.5 |
240.0 |
H11 |
C21 |
C20 |
H9 |
115.9 |
305.1 |
H11 |
C21 |
C20 |
H10 |
357.2 |
65.0 |
C20 |
C21 |
H11 |
H12 |
239.4 |
120.0 |
O22 |
C21 |
H12 |
H11 |
239.5 |
119.9 |
H12 |
C21 |
C20 |
H9 |
355.5 |
65.0 |
H12 |
C21 |
C20 |
H10 |
236.8 |
185.0 |
C20 |
C21 |
H12 |
H11 |
120.6 |
240.0 |
C10 |
C23 |
H13 |
N19 |
242.9 |
246.9 |
C10 |
C23 |
H13 |
H14 |
121.5 |
123.5 |
N19 |
C23 |
H13 |
H14 |
238.5 |
236.6 |
C10 |
C23 |
H14 |
N19 |
117.0 |
113.1 |
C10 |
C23 |
H14 |
H13 |
238.5 |
236.5 |
N19 |
C23 |
H14 |
H13 |
121.5 |
123.4 |
C25 |
C24 |
H15 |
H16 |
117.3 |
240.0 |
C25 |
C24 |
H16 |
H15 |
242.7 |
120.0 |
N07 |
C25 |
H17 |
H18 |
118.1 |
239.6 |
H17 |
C25 |
C24 |
H15 |
307.9 |
306.2 |
H17 |
C25 |
C24 |
H16 |
66.1 |
186.2 |
N07 |
C25 |
H18 |
H17 |
241.9 |
120.4 |
H18 |
C25 |
C24 |
H15 |
189.1 |
66.5 |
H18 |
C25 |
C24 |
H16 |
307.4 |
306.5 |
C29 |
C28 |
H19 |
H20 |
118.0 |
240.5 |
H19 |
C28 |
C27 |
N26 |
52.3 |
282.7 |
C29 |
C28 |
H20 |
H19 |
242.0 |
119.5 |
H20 |
C28 |
C27 |
N26 |
293.6 |
42.1 |
C30 |
C29 |
H21 |
H22 |
119.6 |
239.3 |
H21 |
C29 |
C28 |
H19 |
39.9 |
50.4 |
H21 |
C29 |
C28 |
H20 |
158.6 |
291.0 |
C30 |
C29 |
H22 |
H21 |
240.4 |
120.6 |
H22 |
C29 |
C28 |
H19 |
280.2 |
171.0 |
H22 |
C29 |
C28 |
H20 |
38.9 |
51.5 |
H23 |
C30 |
C01 |
H2 |
295.6 |
50.1 |
H23 |
C30 |
C01 |
H3 |
55.5 |
290.6 |
H23 |
C30 |
C29 |
H21 |
295.4 |
51.4 |
H23 |
C30 |
C29 |
H22 |
55.1 |
290.7 |
H24 |
C30 |
C01 |
H2 |
55.9 |
170.7 |
H24 |
C30 |
C01 |
H3 |
175.7 |
51.2 |
H24 |
C30 |
C29 |
H21 |
175.1 |
290.8 |
H24 |
C30 |
C29 |
H22 |
294.8 |
170.2 |
C03 |
N05 |
H25 |
C06 |
180.0 |
180.0 |
H25 |
N05 |
C06 |
N07 |
0.9 |
0.2 |
H26 |
O22 |
C21 |
H11 |
299.8 |
60.0 |
H26 |
O22 |
C21 |
H12 |
60.2 |
300.1 |