Atom Nomenclature for 9H7

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9H7

Atom Name (V3) Atom Name (V2)
C10 C1
C13 C2
C15 C3
C17 C4
C20 C5
C21 C6
C22 C7
C01 C8
C02 C9
C03 C10
C04 C11
C05 C12
C06 C13
C07 C14
C08 C15
C09 C16
C11 C17
C14 C18
C19 C19
C23 C20
C25 C21
C27 C22
C33 C23
C34 C24
C35 C25
C37 C26
C40 C27
C41 C28
C42 C29
C43 C30
C45 C31
C46 C32
C47 C33
C48 C34
C49 C35
C50 C36
C52 C37
C54 C38
N16 N1
N24 N2
N29 N3
N36 N4
N44 N5
N51 N6
O12 O1
O18 O2
O26 O3
O28 O4
O31 O5
O32 O6
O38 O7
O39 O8
S30 S1
S53 S2
H131 H1
H151 H2
H202 H3
H201 H4
H211 H5
H212 H6
H221 H7
H012 H8
H011 H9
H021 H10
H031 H11
H032 H12
H041 H13
H042 H14
H051 H15
H061 H16
H072 H17
H071 H18
H081 H19
H141 H20
H142 H21
H191 H22
H192 H23
H331 H24
H342 H25
H341 H26
H351 H27
H352 H28
H412 H29
H413 H30
H411 H31
H422 H32
H423 H33
H421 H34
H433 H35
H432 H36
H431 H37
H461 H38
H471 H39
H481 H40
H491 H41
H521 H42
H241 H44
H1 H45
H361 H46
H541 H47