Atom Nomenclature for 9H4

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9H4

Atom Name (V3) Atom Name (V2)
C10 C1
C13 C2
C20 C3
C21 C4
C22 C5
C24 C6
C26 C7
C01 C8
C02 C9
C03 C10
C04 C11
C05 C12
C06 C13
C07 C14
C08 C15
C09 C16
C12 C17
C14 C18
C16 C19
C18 C20
C19 C21
C32 C22
C33 C23
C34 C24
C36 C25
C39 C26
C40 C27
C41 C28
C42 C29
C44 C30
C45 C31
C46 C32
C48 C33
C49 C34
C50 C35
C51 C36
C53 C37
N15 N1
N23 N2
N28 N3
N35 N4
N43 N5
N52 N6
O11 O1
O17 O2
O25 O3
O27 O4
O30 O5
O31 O6
O37 O7
O38 O8
O47 O9
S29 S1
H132 H1
H131 H2
H202 H3
H201 H4
H211 H5
H012 H6
H011 H7
H021 H8
H031 H9
H032 H10
H041 H11
H042 H12
H051 H13
H061 H14
H071 H15
H072 H16
H081 H17
H083 H18
H082 H19
H121 H20
H141 H21
H182 H22
H181 H23
H192 H24
H191 H25
H332 H26
H331 H27
H341 H28
H342 H29
H403 H30
H402 H31
H401 H32
H411 H33
H412 H34
H413 H35
H423 H36
H422 H37
H421 H38
H451 H39
H481 H40
H483 H41
H482 H42
H491 H43
H501 H44
H532 H45
H531 H46
H533 H47
H231 H48
H1 H49
H351 H50