Atom Nomenclature for 9GZ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9GZ

Atom Name (V3) Atom Name (V2)
N1 N1
C4 C1
C5 C2
C6 C3
C7 C4
C8 C5
C10 C6
C13 C7
C15 C8
C17 C9
C1 C10
C11 C11
C12 C12
C14 C13
C16 C14
C2 C15
C3 C16
C9 C17
F1 F1
I1 I1
O1 O1
O2 O2
O3 O3
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11