PDB Chemical Component 9GY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9GY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OAR |
CAQ |
1.228 |
1.212 |
| CBE |
CAO |
1.539 |
1.530 |
| CAS |
CAQ |
1.555 |
1.508 |
| CAQ |
NAP |
1.358 |
1.348 |
| NAP |
CAO |
1.520 |
1.470 |
| NAP |
CAJ |
1.363 |
1.403 |
| CAO |
CAN |
1.552 |
1.535 |
| CAK |
CAJ |
1.407 |
1.386 |
| CAK |
CAL |
1.400 |
1.381 |
| CAJ |
CAI |
1.396 |
1.397 |
| CAL |
CAG |
1.402 |
1.393 |
| CAN |
NAM |
1.497 |
1.463 |
| CAI |
NAM |
1.371 |
1.402 |
| CAI |
CAH |
1.407 |
1.384 |
| CAG |
CAH |
1.410 |
1.394 |
| CAG |
CAE |
1.417 |
1.484 |
| NAM |
CAT |
1.363 |
1.347 |
| CAD |
CAE |
1.410 |
1.390 |
| CAD |
CAC |
1.409 |
1.394 |
| CBD |
NBC |
1.485 |
1.465 |
| CAE |
CAF |
1.406 |
1.395 |
| NBC |
CBA |
1.337 |
1.347 |
| CBA |
OBB |
1.229 |
1.215 |
| CBA |
CAC |
1.412 |
1.479 |
| CAC |
CAB |
1.401 |
1.396 |
| CAT |
OAU |
1.238 |
1.217 |
| CAT |
CAV |
1.341 |
1.466 |
| CAF |
CAA |
1.408 |
1.381 |
| OAW |
CAV |
1.371 |
1.349 |
| OAW |
CAX |
1.407 |
1.340 |
| CAB |
CAA |
1.401 |
1.380 |
| CAV |
CAZ |
1.338 |
1.366 |
| CAX |
CAY |
1.337 |
1.351 |
| CAZ |
CAY |
1.333 |
1.404 |
| CBD |
H1 |
1.100 |
1.090 |
| CBD |
H2 |
1.100 |
1.090 |
| CBD |
H3 |
1.100 |
1.091 |
| NBC |
H4 |
1.000 |
0.970 |
| CAD |
H5 |
1.080 |
1.080 |
| CAB |
H6 |
1.081 |
1.080 |
| CAA |
H7 |
1.080 |
1.080 |
| CAF |
H8 |
1.080 |
1.079 |
| CAH |
H9 |
1.080 |
1.080 |
| CAL |
H10 |
1.080 |
1.080 |
| CAK |
H11 |
1.080 |
1.080 |
| CAS |
H12 |
1.100 |
1.090 |
| CAS |
H13 |
1.100 |
1.090 |
| CAS |
H14 |
1.100 |
1.089 |
| CAO |
H15 |
1.100 |
1.090 |
| CBE |
H16 |
1.100 |
1.090 |
| CBE |
H17 |
1.099 |
1.090 |
| CBE |
H18 |
1.100 |
1.091 |
| CAN |
H19 |
1.100 |
1.090 |
| CAN |
H20 |
1.100 |
1.090 |
| CAX |
H21 |
1.080 |
1.080 |
| CAY |
H22 |
1.080 |
1.080 |
| CAZ |
H23 |
1.080 |
1.080 |
Bond Angles for 9GY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CBE |
CAO |
CAN |
111.6 |
109.7 |
| CBE |
CAO |
H15 |
107.6 |
109.7 |
| CAQ |
NAP |
CAO |
116.6 |
120.6 |
| NAP |
CAO |
CAN |
111.1 |
108.2 |
| NAP |
CAO |
H15 |
107.8 |
109.7 |
| CAO |
CAN |
NAM |
107.2 |
108.9 |
| CAN |
CAO |
H15 |
107.5 |
109.8 |
| CAO |
CAN |
H19 |
110.1 |
109.7 |
| CAO |
CAN |
H20 |
110.0 |
109.7 |
| CAJ |
CAK |
H11 |
120.2 |
120.0 |
| CAK |
CAL |
H10 |
118.6 |
120.0 |
| CAJ |
CAI |
NAM |
116.2 |
119.9 |
| CAI |
NAM |
CAN |
110.9 |
119.0 |
| CAN |
NAM |
CAT |
118.0 |
120.4 |
| NAM |
CAN |
H19 |
110.0 |
108.7 |
| NAM |
CAN |
H20 |
110.1 |
110.1 |
| CAI |
NAM |
CAT |
130.5 |
120.6 |
| CAI |
CAH |
H9 |
119.3 |
120.1 |
| CAG |
CAH |
H9 |
119.3 |
120.1 |
| NAM |
CAT |
OAU |
118.0 |
120.0 |
| NAM |
CAT |
CAV |
125.4 |
120.0 |
| CAD |
CAE |
CAF |
118.4 |
119.9 |
| CAE |
CAD |
H5 |
119.4 |
120.1 |
| CAD |
CAC |
CAB |
119.1 |
119.8 |
| CBD |
NBC |
CBA |
118.3 |
120.0 |
| NBC |
CBD |
H1 |
109.5 |
109.5 |
| NBC |
CBD |
H2 |
109.5 |
109.5 |
| NBC |
CBD |
H3 |
109.5 |
109.4 |
| CBD |
NBC |
H4 |
120.8 |
119.9 |
| CAE |
CAF |
H8 |
119.3 |
120.0 |
| NBC |
CBA |
OBB |
122.3 |
120.0 |
| NBC |
CBA |
CAC |
116.3 |
120.0 |
| CBA |
NBC |
H4 |
120.8 |
120.1 |
| OBB |
CBA |
CAC |
121.4 |
120.0 |
| CBA |
CAC |
CAB |
118.1 |
120.1 |
| CAC |
CAB |
CAA |
121.1 |
120.1 |
| CAC |
CAB |
H6 |
119.4 |
120.0 |
| OAU |
CAT |
CAV |
116.2 |
120.0 |
| CAT |
CAV |
CAZ |
124.1 |
126.0 |
| CAF |
CAA |
H7 |
120.5 |
119.8 |
| OAW |
CAV |
CAZ |
108.8 |
108.0 |
| OAW |
CAX |
CAY |
107.8 |
108.8 |
| OAW |
CAX |
H21 |
126.1 |
125.7 |
| CAA |
CAB |
H6 |
119.5 |
119.9 |
| CAB |
CAA |
H7 |
120.5 |
119.9 |
| CAV |
CAZ |
CAY |
109.2 |
106.7 |
| CAV |
CAZ |
H23 |
125.4 |
126.7 |
| CAY |
CAX |
H21 |
126.1 |
125.6 |
| CAX |
CAY |
H22 |
125.5 |
126.5 |
| CAZ |
CAY |
H22 |
125.5 |
126.4 |
| H1 |
CBD |
H2 |
109.4 |
109.5 |
| H1 |
CBD |
H3 |
109.5 |
109.5 |
| H2 |
CBD |
H3 |
109.5 |
109.5 |
| H12 |
CAS |
H13 |
109.5 |
109.5 |
| H12 |
CAS |
H14 |
109.4 |
109.4 |
| H13 |
CAS |
H14 |
109.5 |
109.5 |
| H16 |
CBE |
H17 |
109.5 |
109.5 |
| H16 |
CBE |
H18 |
109.4 |
109.5 |
| H17 |
CBE |
H18 |
109.5 |
109.4 |
| H19 |
CAN |
H20 |
109.5 |
109.7 |
Torsion Angles for 9GY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OAR |
CAQ |
NAP |
CAO |
358.7 |
181.1 |
| NAP |
CAO |
CBE |
CAN |
124.6 |
118.8 |
| NAP |
CAO |
CBE |
H15 |
242.2 |
239.4 |
| CBE |
CAO |
CAN |
NAM |
150.3 |
63.8 |
| CAN |
CAO |
CBE |
H15 |
117.6 |
120.7 |
| CBE |
CAO |
CAN |
H19 |
270.0 |
182.6 |
| CBE |
CAO |
CAN |
H20 |
30.7 |
303.2 |
| CAS |
CAQ |
NAP |
CAO |
179.1 |
1.2 |
| CAQ |
NAP |
CAO |
CAN |
205.3 |
225.0 |
| CAQ |
NAP |
CAO |
H15 |
322.8 |
344.8 |
| CBE |
CAO |
NAP |
CAN |
235.1 |
240.3 |
| CBE |
CAO |
NAP |
H15 |
117.6 |
120.6 |
| NAP |
CAO |
CAN |
NAM |
25.8 |
304.2 |
| CAN |
CAO |
NAP |
H15 |
242.5 |
240.2 |
| NAP |
CAO |
CAN |
H19 |
145.4 |
63.0 |
| NAP |
CAO |
CAN |
H20 |
266.1 |
183.6 |
| NAP |
CAJ |
CAK |
H11 |
0.3 |
359.0 |
| NAP |
CAJ |
CAI |
NAM |
3.4 |
0.5 |
| CBE |
CAO |
CAN |
H15 |
242.3 |
239.4 |
| NAP |
CAO |
CAN |
H15 |
117.7 |
119.7 |
| CAI |
NAM |
CAN |
CAO |
296.0 |
43.8 |
| CAO |
CAN |
NAM |
CAT |
124.0 |
224.7 |
| NAM |
CAN |
CAO |
H19 |
240.4 |
241.2 |
| NAM |
CAN |
CAO |
H20 |
119.7 |
120.6 |
| H19 |
CAN |
CAO |
H20 |
239.3 |
239.4 |
| CAJ |
CAK |
CAL |
H10 |
181.3 |
179.6 |
| CAK |
CAJ |
CAI |
NAM |
184.0 |
179.6 |
| CAJ |
CAI |
NAM |
CAN |
51.3 |
344.3 |
| CAJ |
CAI |
NAM |
CAT |
222.0 |
163.3 |
| CAJ |
CAI |
CAH |
H9 |
184.6 |
180.0 |
| CAL |
CAG |
CAH |
H9 |
176.3 |
180.2 |
| NAM |
CAN |
CAO |
H15 |
268.0 |
184.5 |
| CAO |
CAN |
NAM |
H19 |
119.7 |
119.4 |
| CAO |
CAN |
NAM |
H20 |
240.4 |
239.7 |
| CAI |
NAM |
CAN |
CAT |
172.0 |
179.1 |
| CAN |
NAM |
CAT |
OAU |
357.4 |
172.2 |
| CAN |
NAM |
CAT |
CAV |
184.8 |
352.3 |
| H19 |
CAN |
NAM |
H20 |
120.7 |
120.2 |
| CAO |
CAN |
NAM |
CAI |
296.0 |
43.8 |
| CAN |
NAM |
CAI |
CAT |
189.3 |
180.9 |
| CAI |
NAM |
CAN |
H19 |
176.3 |
284.3 |
| CAI |
NAM |
CAN |
H20 |
55.6 |
164.1 |
| NAM |
CAI |
CAH |
H9 |
357.7 |
0.0 |
| CAI |
NAM |
CAT |
OAU |
187.3 |
353.2 |
| CAI |
NAM |
CAT |
CAV |
14.7 |
173.2 |
| CAG |
CAH |
CAI |
H9 |
180.0 |
180.0 |
| CAI |
CAH |
CAG |
H9 |
180.0 |
180.0 |
| CAG |
CAE |
CAD |
H5 |
2.8 |
0.0 |
| CAG |
CAE |
CAF |
H8 |
358.9 |
0.0 |
| CAI |
NAM |
CAT |
CAN |
189.9 |
181.0 |
| CAT |
NAM |
CAN |
H19 |
4.3 |
105.3 |
| CAT |
NAM |
CAN |
H20 |
243.6 |
345.0 |
| OAU |
CAT |
NAM |
CAV |
172.6 |
180.0 |
| NAM |
CAT |
CAV |
CAZ |
184.4 |
173.0 |
| CAE |
CAD |
CAC |
CAB |
359.3 |
0.2 |
| CAD |
CAE |
CAF |
H8 |
182.5 |
180.0 |
| CBA |
CAC |
CAD |
CAB |
182.5 |
179.8 |
| CAD |
CAC |
CAB |
CAA |
0.7 |
359.8 |
| CAD |
CAC |
CAB |
H6 |
180.7 |
179.8 |
| CBD |
NBC |
CBA |
OBB |
1.3 |
0.1 |
| CBD |
NBC |
CBA |
CAC |
183.3 |
180.0 |
| CBA |
NBC |
CBD |
H4 |
180.0 |
179.9 |
| H1 |
CBD |
NBC |
H2 |
240.0 |
240.0 |
| H1 |
CBD |
NBC |
H3 |
120.0 |
120.0 |
| H2 |
CBD |
NBC |
H3 |
240.0 |
240.0 |
| CAF |
CAE |
CAD |
H5 |
179.1 |
180.0 |
| CAE |
CAF |
CAA |
H7 |
177.5 |
180.3 |
| CBA |
NBC |
CBD |
H1 |
180.0 |
59.9 |
| CBA |
NBC |
CBD |
H2 |
300.0 |
180.0 |
| CBA |
NBC |
CBD |
H3 |
60.0 |
300.0 |
| CBD |
NBC |
CBA |
H4 |
180.0 |
180.1 |
| OBB |
CBA |
NBC |
CAC |
178.0 |
180.1 |
| NBC |
CBA |
CAC |
CAB |
53.0 |
0.1 |
| NBC |
CBA |
OBB |
CAC |
182.1 |
179.9 |
| OBB |
CBA |
NBC |
H4 |
181.3 |
180.0 |
| OBB |
CBA |
CAC |
CAB |
235.0 |
180.0 |
| CAD |
CAC |
CBA |
CAB |
177.5 |
180.2 |
| NBC |
CBA |
CAC |
OBB |
178.0 |
180.1 |
| CAC |
CBA |
NBC |
H4 |
3.3 |
359.9 |
| CBA |
CAC |
CAB |
CAA |
178.3 |
180.0 |
| CBA |
CAC |
CAB |
H6 |
358.3 |
360.0 |
| CAA |
CAB |
CAC |
H6 |
180.0 |
180.0 |
| CAC |
CAB |
CAA |
H7 |
180.9 |
180.0 |
| NAM |
CAT |
OAU |
CAV |
186.7 |
180.0 |
| OAU |
CAT |
CAV |
CAZ |
11.7 |
353.0 |
| NAM |
CAT |
CAV |
OAU |
172.7 |
180.0 |
| OAW |
CAV |
CAT |
CAZ |
183.1 |
180.3 |
| CAT |
CAV |
CAZ |
CAY |
182.4 |
179.9 |
| CAT |
CAV |
CAZ |
H23 |
2.4 |
0.1 |
| CAD |
CAE |
CAF |
CAA |
2.5 |
359.8 |
| CAF |
CAA |
CAB |
H6 |
180.8 |
180.0 |
| CAB |
CAA |
CAF |
H7 |
180.0 |
179.9 |
| CAT |
CAV |
OAW |
CAZ |
177.3 |
179.7 |
| OAW |
CAV |
CAZ |
CAY |
359.8 |
359.6 |
| OAW |
CAV |
CAZ |
H23 |
179.8 |
179.8 |
| CAX |
OAW |
CAV |
CAZ |
0.5 |
0.3 |
| CAY |
CAX |
OAW |
H21 |
180.0 |
180.0 |
| OAW |
CAX |
CAY |
H22 |
180.5 |
180.0 |
| CAC |
CAB |
CAA |
H6 |
180.0 |
180.0 |
| CAF |
CAA |
CAB |
H7 |
180.0 |
180.1 |
| CAV |
CAZ |
CAY |
H22 |
179.8 |
180.1 |
| OAW |
CAX |
CAY |
H21 |
180.0 |
180.0 |
| CAV |
CAZ |
CAY |
CAX |
359.8 |
0.4 |
| CAZ |
CAY |
CAX |
H22 |
180.0 |
179.7 |
| CAV |
CAZ |
CAY |
H23 |
180.0 |
180.2 |
| CAZ |
CAY |
CAX |
H21 |
180.5 |
179.7 |
| CAX |
CAY |
CAZ |
H22 |
180.0 |
180.3 |
| H1 |
CBD |
NBC |
CBA |
180.0 |
59.9 |
| NBC |
CBD |
H1 |
H2 |
120.0 |
120.1 |
| NBC |
CBD |
H1 |
H3 |
240.0 |
240.1 |
| H1 |
CBD |
NBC |
H4 |
0.0 |
240.0 |
| H2 |
CBD |
H1 |
H3 |
120.0 |
120.0 |
| H2 |
CBD |
NBC |
CBA |
300.0 |
180.0 |
| NBC |
CBD |
H2 |
H1 |
240.0 |
240.0 |
| NBC |
CBD |
H2 |
H3 |
120.0 |
119.9 |
| H2 |
CBD |
NBC |
H4 |
120.0 |
0.1 |
| H1 |
CBD |
H2 |
H3 |
240.0 |
240.0 |
| H3 |
CBD |
NBC |
CBA |
60.0 |
300.0 |
| NBC |
CBD |
H3 |
H1 |
120.0 |
120.0 |
| NBC |
CBD |
H3 |
H2 |
240.0 |
240.0 |
| H3 |
CBD |
NBC |
H4 |
240.0 |
120.1 |
| H1 |
CBD |
H3 |
H2 |
120.0 |
120.0 |
| CBD |
NBC |
H4 |
CBA |
180.0 |
179.9 |
| H4 |
NBC |
CBD |
H1 |
0.0 |
240.0 |
| H4 |
NBC |
CBD |
H2 |
120.0 |
0.1 |
| H4 |
NBC |
CBD |
H3 |
240.0 |
120.1 |
| H4 |
NBC |
CBA |
OBB |
181.3 |
180.0 |
| H4 |
NBC |
CBA |
CAC |
3.3 |
359.9 |
| H5 |
CAD |
CAE |
CAF |
179.1 |
180.0 |
| H5 |
CAD |
CAC |
CAB |
179.3 |
180.3 |
| CAC |
CAB |
H6 |
CAA |
180.0 |
180.0 |
| H6 |
CAB |
CAA |
H7 |
0.9 |
360.0 |
| H7 |
CAA |
CAB |
H6 |
0.9 |
360.0 |
| H8 |
CAF |
CAA |
H7 |
357.5 |
0.0 |
| H11 |
CAK |
CAL |
H10 |
1.3 |
0.3 |
| H13 |
CAS |
H12 |
H14 |
120.0 |
120.0 |
| H12 |
CAS |
H13 |
H14 |
240.0 |
240.0 |
| H12 |
CAS |
H14 |
H13 |
120.0 |
120.0 |
| CBE |
CAO |
H15 |
CAN |
120.3 |
120.6 |
| NAP |
CAO |
H15 |
CAN |
240.2 |
241.2 |
| H15 |
CAO |
CAN |
NAM |
268.0 |
184.5 |
| H15 |
CAO |
CAN |
H19 |
27.7 |
303.3 |
| H15 |
CAO |
CAN |
H20 |
148.4 |
63.8 |
| H16 |
CBE |
CAO |
CAN |
55.4 |
301.2 |
| H16 |
CBE |
CAO |
H15 |
297.8 |
180.6 |
| H17 |
CBE |
H16 |
H18 |
120.0 |
120.0 |
| H17 |
CBE |
CAO |
CAN |
175.5 |
61.3 |
| H17 |
CBE |
CAO |
H15 |
57.8 |
300.6 |
| H16 |
CBE |
H17 |
H18 |
240.0 |
240.0 |
| H18 |
CBE |
CAO |
CAN |
295.5 |
181.2 |
| H18 |
CBE |
CAO |
H15 |
177.8 |
60.6 |
| H16 |
CBE |
H18 |
H17 |
120.0 |
120.0 |
| CAO |
CAN |
H19 |
NAM |
242.1 |
241.1 |
| H19 |
CAN |
CAO |
H15 |
27.7 |
303.3 |
| CAO |
CAN |
H19 |
H20 |
121.0 |
120.6 |
| H19 |
CAN |
NAM |
CAT |
4.3 |
105.3 |
| NAM |
CAN |
H19 |
H20 |
238.9 |
239.5 |
| CAO |
CAN |
H20 |
NAM |
117.9 |
119.8 |
| H20 |
CAN |
CAO |
H15 |
148.4 |
63.8 |
| CAO |
CAN |
H20 |
H19 |
238.9 |
239.5 |
| H20 |
CAN |
NAM |
CAT |
243.6 |
345.0 |
| NAM |
CAN |
H20 |
H19 |
121.0 |
119.6 |
| OAW |
CAX |
H21 |
CAY |
180.0 |
180.0 |
| H21 |
CAX |
CAY |
H22 |
0.5 |
360.0 |
| H22 |
CAY |
CAX |
H21 |
0.5 |
360.0 |
| CAV |
CAZ |
H23 |
CAY |
180.0 |
179.8 |
| H23 |
CAZ |
CAY |
H22 |
359.8 |
360.0 |