PDB Chemical Component 9GV
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9GV
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C10 |
N11 |
1.473 |
1.465 |
| C10 |
C9 |
1.514 |
1.507 |
| C32 |
C9 |
1.388 |
1.382 |
| C32 |
C33 |
1.394 |
1.383 |
| O13 |
C12 |
1.225 |
1.216 |
| N11 |
C12 |
1.358 |
1.348 |
| C9 |
C8 |
1.394 |
1.383 |
| C12 |
C14 |
1.479 |
1.472 |
| C22 |
N23 |
1.299 |
1.306 |
| C22 |
C21 |
1.404 |
1.406 |
| C33 |
C6 |
1.393 |
1.382 |
| N23 |
N24 |
1.397 |
1.401 |
| C14 |
C21 |
1.468 |
1.462 |
| C14 |
C15 |
1.395 |
1.392 |
| C21 |
C20 |
1.417 |
1.407 |
| C8 |
C7 |
1.385 |
1.383 |
| N24 |
C20 |
1.378 |
1.372 |
| N24 |
C25 |
1.396 |
1.401 |
| C15 |
N16 |
1.322 |
1.318 |
| C26 |
C25 |
1.398 |
1.389 |
| C26 |
C27 |
1.386 |
1.381 |
| C20 |
C17 |
1.402 |
1.397 |
| C6 |
C7 |
1.386 |
1.383 |
| C6 |
S3 |
1.766 |
1.762 |
| C25 |
C31 |
1.399 |
1.389 |
| C27 |
C28 |
1.395 |
1.385 |
| O5 |
S3 |
1.423 |
1.421 |
| N16 |
C17 |
1.328 |
1.321 |
| C17 |
O18 |
1.358 |
1.355 |
| S3 |
N2 |
1.665 |
1.656 |
| S3 |
O4 |
1.421 |
1.421 |
| C31 |
C30 |
1.388 |
1.381 |
| C28 |
C30 |
1.393 |
1.385 |
| C28 |
F29 |
1.348 |
1.351 |
| N2 |
C1 |
1.470 |
1.465 |
| O18 |
C19 |
1.431 |
1.429 |
| C7 |
H1 |
1.080 |
1.079 |
| C8 |
H2 |
1.080 |
1.080 |
| C10 |
H3 |
1.100 |
1.090 |
| C10 |
H4 |
1.100 |
1.090 |
| C15 |
H5 |
1.080 |
1.081 |
| C22 |
H6 |
1.080 |
1.080 |
| C26 |
H7 |
1.080 |
1.080 |
| C27 |
H8 |
1.080 |
1.080 |
| C30 |
H9 |
1.080 |
1.080 |
| C31 |
H10 |
1.080 |
1.080 |
| C19 |
H11 |
1.100 |
1.090 |
| C19 |
H12 |
1.101 |
1.089 |
| C19 |
H13 |
1.100 |
1.090 |
| N11 |
H14 |
1.000 |
0.969 |
| C32 |
H15 |
1.080 |
1.080 |
| C33 |
H16 |
1.081 |
1.080 |
| N2 |
H17 |
1.000 |
0.970 |
| C1 |
H18 |
1.100 |
1.089 |
| C1 |
H19 |
1.100 |
1.089 |
| C1 |
H20 |
1.100 |
1.091 |
Bond Angles for 9GV
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N11 |
C10 |
C9 |
109.8 |
109.4 |
| C10 |
N11 |
C12 |
123.8 |
120.0 |
| N11 |
C10 |
H3 |
109.4 |
109.4 |
| N11 |
C10 |
H4 |
109.4 |
109.5 |
| C10 |
N11 |
H14 |
118.1 |
120.0 |
| C9 |
C10 |
H3 |
109.4 |
109.5 |
| C9 |
C10 |
H4 |
109.4 |
109.5 |
| C33 |
C32 |
H15 |
120.1 |
120.0 |
| C32 |
C33 |
H16 |
119.8 |
120.0 |
| C9 |
C8 |
H2 |
119.5 |
120.0 |
| C22 |
N23 |
N24 |
109.5 |
109.6 |
| N23 |
C22 |
H6 |
125.4 |
125.7 |
| C33 |
C6 |
S3 |
120.7 |
120.0 |
| C14 |
C15 |
H5 |
119.5 |
119.5 |
| C8 |
C7 |
H1 |
120.2 |
120.0 |
| C15 |
N16 |
C17 |
124.5 |
123.3 |
| N16 |
C15 |
H5 |
119.5 |
119.5 |
| C27 |
C26 |
C25 |
119.3 |
119.9 |
| C26 |
C25 |
C31 |
120.7 |
119.9 |
| C25 |
C26 |
H7 |
120.3 |
120.0 |
| C26 |
C27 |
C28 |
120.0 |
120.1 |
| C27 |
C26 |
H7 |
120.4 |
120.0 |
| C26 |
C27 |
H8 |
120.0 |
120.0 |
| C20 |
C17 |
O18 |
119.7 |
119.4 |
| C7 |
C6 |
S3 |
119.5 |
119.9 |
| C6 |
C7 |
H1 |
120.2 |
120.1 |
| C6 |
S3 |
N2 |
106.6 |
107.2 |
| C6 |
S3 |
O4 |
107.2 |
106.4 |
| C25 |
C31 |
H10 |
120.2 |
120.0 |
| C27 |
C28 |
C30 |
120.8 |
120.1 |
| O5 |
S3 |
N2 |
106.6 |
106.4 |
| C17 |
O18 |
C19 |
119.5 |
117.0 |
| O4 |
S3 |
N2 |
106.8 |
106.4 |
| S3 |
N2 |
C1 |
121.7 |
120.0 |
| S3 |
N2 |
H17 |
106.3 |
120.0 |
| C31 |
C30 |
H9 |
120.3 |
120.0 |
| F29 |
C28 |
C30 |
119.6 |
120.0 |
| C28 |
C30 |
H9 |
120.3 |
119.9 |
| C1 |
N2 |
H17 |
106.3 |
120.0 |
| N2 |
C1 |
H18 |
109.5 |
109.4 |
| N2 |
C1 |
H19 |
109.5 |
109.5 |
| N2 |
C1 |
H20 |
109.5 |
109.5 |
| O18 |
C19 |
H11 |
109.5 |
109.4 |
| O18 |
C19 |
H12 |
109.5 |
109.5 |
| O18 |
C19 |
H13 |
109.5 |
109.5 |
| H3 |
C10 |
H4 |
109.5 |
109.5 |
| H11 |
C19 |
H12 |
109.5 |
109.5 |
| H11 |
C19 |
H13 |
109.5 |
109.5 |
| H12 |
C19 |
H13 |
109.5 |
109.5 |
| H18 |
C1 |
H19 |
109.5 |
109.5 |
| H18 |
C1 |
H20 |
109.5 |
109.5 |
| H19 |
C1 |
H20 |
109.4 |
109.5 |
Torsion Angles for 9GV
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C9 |
C10 |
N11 |
H3 |
239.9 |
240.0 |
| C9 |
C10 |
N11 |
H4 |
120.1 |
120.0 |
| H3 |
C10 |
N11 |
H4 |
240.1 |
240.0 |
| C9 |
C10 |
N11 |
C12 |
287.1 |
180.0 |
| N11 |
C10 |
C9 |
H3 |
120.0 |
120.0 |
| N11 |
C10 |
C9 |
H4 |
240.0 |
240.0 |
| C9 |
C10 |
N11 |
H14 |
107.1 |
360.0 |
| C10 |
C9 |
C8 |
H2 |
358.0 |
360.0 |
| H3 |
C10 |
C9 |
H4 |
119.9 |
120.1 |
| C32 |
C9 |
C10 |
H3 |
35.8 |
150.1 |
| C32 |
C9 |
C10 |
H4 |
275.9 |
30.0 |
| C32 |
C9 |
C8 |
H2 |
178.4 |
180.0 |
| C32 |
C33 |
C6 |
S3 |
178.6 |
179.7 |
| C10 |
N11 |
C12 |
O13 |
359.1 |
359.9 |
| C12 |
N11 |
C10 |
C9 |
287.1 |
180.0 |
| C12 |
N11 |
C10 |
H3 |
47.2 |
300.0 |
| C12 |
N11 |
C10 |
H4 |
167.0 |
60.1 |
| C10 |
N11 |
C12 |
H14 |
180.0 |
180.0 |
| C9 |
C8 |
C7 |
H1 |
182.8 |
180.0 |
| C10 |
N11 |
C12 |
C14 |
176.7 |
180.0 |
| C12 |
C14 |
C15 |
H5 |
1.4 |
0.3 |
| C7 |
C6 |
C33 |
S3 |
182.1 |
179.7 |
| C33 |
C6 |
C7 |
H1 |
177.7 |
180.3 |
| C33 |
C6 |
S3 |
N2 |
276.2 |
269.7 |
| C33 |
C6 |
S3 |
O4 |
162.2 |
23.2 |
| N24 |
N23 |
C22 |
H6 |
179.5 |
180.0 |
| C21 |
C14 |
C15 |
H5 |
175.8 |
180.2 |
| N16 |
C15 |
C14 |
H5 |
180.0 |
179.7 |
| C21 |
C20 |
C17 |
O18 |
178.5 |
179.4 |
| C8 |
C7 |
C6 |
S3 |
179.8 |
180.0 |
| C6 |
C7 |
C8 |
H1 |
180.0 |
180.0 |
| N24 |
C20 |
C17 |
O18 |
356.8 |
359.9 |
| C22 |
N23 |
N24 |
C25 |
177.2 |
179.4 |
| N24 |
C25 |
C26 |
H7 |
355.9 |
0.3 |
| N24 |
C25 |
C31 |
H10 |
3.9 |
360.0 |
| C14 |
C15 |
N16 |
H5 |
180.0 |
180.3 |
| C25 |
C26 |
C27 |
C28 |
358.6 |
0.1 |
| C27 |
C26 |
C25 |
H7 |
180.0 |
179.6 |
| C25 |
C26 |
C27 |
H8 |
178.6 |
180.0 |
| C26 |
C25 |
C31 |
H10 |
176.5 |
179.9 |
| C27 |
C26 |
C25 |
C31 |
3.3 |
360.0 |
| C25 |
C26 |
C27 |
H7 |
180.0 |
180.4 |
| C26 |
C27 |
C28 |
C30 |
359.7 |
359.9 |
| C15 |
N16 |
C17 |
C20 |
357.0 |
360.0 |
| C20 |
C17 |
O18 |
C19 |
144.7 |
180.0 |
| C33 |
C6 |
C7 |
S3 |
177.9 |
180.3 |
| C8 |
C7 |
C6 |
H1 |
180.0 |
180.0 |
| C7 |
C6 |
S3 |
N2 |
94.1 |
90.0 |
| C7 |
C6 |
S3 |
O4 |
340.0 |
203.5 |
| S3 |
C6 |
C7 |
H1 |
359.8 |
0.0 |
| O5 |
S3 |
C6 |
N2 |
113.8 |
246.4 |
| O4 |
S3 |
C6 |
N2 |
245.9 |
113.5 |
| C6 |
S3 |
N2 |
C1 |
304.3 |
65.0 |
| C6 |
S3 |
N2 |
H17 |
66.0 |
245.0 |
| C31 |
C25 |
C26 |
H7 |
183.3 |
180.3 |
| C25 |
C31 |
C30 |
H9 |
181.8 |
180.0 |
| C28 |
C27 |
C26 |
C25 |
358.6 |
0.1 |
| C28 |
C27 |
C26 |
H7 |
178.6 |
179.7 |
| C26 |
C27 |
C28 |
H8 |
180.0 |
179.9 |
| F29 |
C28 |
C27 |
C30 |
179.9 |
180.1 |
| C27 |
C28 |
C30 |
H9 |
180.1 |
180.1 |
| C6 |
S3 |
O5 |
N2 |
246.2 |
114.1 |
| O4 |
S3 |
O5 |
N2 |
122.7 |
237.0 |
| O5 |
S3 |
N2 |
C1 |
190.3 |
178.6 |
| O5 |
S3 |
N2 |
H17 |
312.0 |
358.5 |
| C17 |
N16 |
C15 |
H5 |
184.3 |
180.0 |
| C15 |
N16 |
C17 |
O18 |
180.2 |
180.1 |
| C17 |
O18 |
C19 |
H11 |
180.0 |
300.0 |
| C17 |
O18 |
C19 |
H12 |
300.0 |
60.1 |
| C17 |
O18 |
C19 |
H13 |
60.0 |
180.0 |
| C6 |
S3 |
N2 |
O4 |
245.6 |
113.5 |
| C1 |
N2 |
S3 |
H17 |
238.3 |
180.0 |
| S3 |
N2 |
C1 |
H18 |
180.0 |
300.0 |
| S3 |
N2 |
C1 |
H19 |
300.0 |
60.0 |
| S3 |
N2 |
C1 |
H20 |
60.0 |
180.0 |
| C6 |
S3 |
O4 |
N2 |
114.0 |
246.0 |
| O5 |
S3 |
O4 |
N2 |
237.4 |
123.0 |
| O4 |
S3 |
N2 |
C1 |
58.7 |
311.5 |
| O4 |
S3 |
N2 |
H17 |
180.4 |
131.5 |
| C26 |
C25 |
C31 |
C30 |
356.5 |
0.0 |
| C28 |
C30 |
C31 |
H9 |
180.0 |
180.0 |
| C31 |
C30 |
C28 |
H9 |
180.0 |
180.0 |
| C26 |
C27 |
C28 |
F29 |
179.6 |
180.0 |
| C27 |
C28 |
F29 |
C30 |
180.1 |
179.9 |
| F29 |
C28 |
C30 |
H9 |
0.2 |
360.0 |
| S3 |
N2 |
C1 |
H17 |
121.7 |
180.0 |
| H18 |
C1 |
N2 |
H19 |
240.0 |
240.0 |
| H18 |
C1 |
N2 |
H20 |
120.0 |
120.0 |
| H19 |
C1 |
N2 |
H20 |
240.0 |
240.0 |
| H11 |
C19 |
O18 |
H12 |
240.0 |
240.0 |
| H11 |
C19 |
O18 |
H13 |
120.0 |
120.0 |
| H12 |
C19 |
O18 |
H13 |
240.0 |
240.0 |
| H1 |
C7 |
C6 |
S3 |
359.8 |
0.0 |
| H2 |
C8 |
C7 |
H1 |
2.7 |
360.0 |
| N11 |
C10 |
H3 |
C9 |
239.7 |
240.0 |
| H3 |
C10 |
N11 |
C12 |
47.2 |
300.0 |
| N11 |
C10 |
H3 |
H4 |
119.8 |
120.0 |
| H3 |
C10 |
N11 |
H14 |
227.2 |
120.0 |
| C9 |
C10 |
H3 |
H4 |
240.1 |
240.0 |
| N11 |
C10 |
H4 |
C9 |
120.3 |
120.0 |
| H4 |
C10 |
N11 |
C12 |
167.0 |
60.1 |
| N11 |
C10 |
H4 |
H3 |
240.2 |
240.0 |
| H4 |
C10 |
N11 |
H14 |
347.1 |
240.0 |
| C9 |
C10 |
H4 |
H3 |
119.9 |
120.0 |
| H5 |
C15 |
N16 |
C17 |
184.3 |
180.0 |
| H6 |
C22 |
N23 |
N24 |
179.5 |
180.0 |
| C27 |
C26 |
H7 |
C25 |
180.0 |
180.4 |
| H7 |
C26 |
C25 |
C31 |
183.3 |
180.3 |
| H7 |
C26 |
C27 |
C28 |
178.6 |
179.7 |
| H7 |
C26 |
C27 |
H8 |
358.6 |
359.6 |
| H8 |
C27 |
C26 |
C25 |
178.6 |
180.0 |
| C26 |
C27 |
H8 |
C28 |
180.0 |
180.1 |
| H8 |
C27 |
C26 |
H7 |
358.6 |
359.6 |
| H8 |
C27 |
C28 |
C30 |
179.7 |
180.0 |
| H10 |
C31 |
C30 |
H9 |
1.8 |
0.0 |
| O18 |
C19 |
H11 |
H12 |
120.0 |
120.0 |
| O18 |
C19 |
H11 |
H13 |
240.0 |
240.0 |
| H12 |
C19 |
H11 |
H13 |
120.0 |
120.0 |
| O18 |
C19 |
H12 |
H11 |
240.0 |
240.0 |
| O18 |
C19 |
H12 |
H13 |
120.0 |
120.0 |
| H11 |
C19 |
H12 |
H13 |
240.0 |
240.0 |
| O18 |
C19 |
H13 |
H11 |
120.0 |
120.0 |
| O18 |
C19 |
H13 |
H12 |
240.0 |
240.0 |
| H11 |
C19 |
H13 |
H12 |
120.0 |
120.0 |
| H14 |
N11 |
C10 |
C9 |
107.1 |
360.0 |
| C10 |
N11 |
H14 |
C12 |
180.0 |
180.0 |
| H14 |
N11 |
C10 |
H3 |
227.2 |
120.0 |
| H14 |
N11 |
C10 |
H4 |
347.1 |
240.0 |
| H15 |
C32 |
C33 |
H16 |
0.4 |
359.7 |
| H16 |
C33 |
C32 |
H15 |
0.4 |
359.7 |
| H16 |
C33 |
C6 |
S3 |
358.6 |
0.3 |
| S3 |
N2 |
H17 |
C1 |
229.0 |
180.0 |
| H17 |
N2 |
C1 |
H18 |
58.4 |
120.0 |
| H17 |
N2 |
C1 |
H19 |
178.4 |
240.0 |
| H17 |
N2 |
C1 |
H20 |
298.3 |
0.0 |
| H18 |
C1 |
N2 |
H17 |
58.4 |
120.0 |
| N2 |
C1 |
H18 |
H19 |
120.0 |
120.0 |
| N2 |
C1 |
H18 |
H20 |
240.0 |
240.0 |
| H19 |
C1 |
H18 |
H20 |
120.0 |
120.0 |
| H19 |
C1 |
N2 |
H17 |
178.4 |
240.0 |
| N2 |
C1 |
H19 |
H18 |
240.0 |
240.0 |
| N2 |
C1 |
H19 |
H20 |
120.0 |
120.0 |
| H18 |
C1 |
H19 |
H20 |
240.0 |
240.0 |
| H20 |
C1 |
N2 |
H17 |
298.3 |
0.0 |
| N2 |
C1 |
H20 |
H18 |
120.0 |
120.0 |
| N2 |
C1 |
H20 |
H19 |
240.0 |
240.0 |
| H18 |
C1 |
H20 |
H19 |
120.0 |
120.0 |