PDB Chemical Component 9GP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 9GP

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O2	C2	1.432	1.429
O2	HO2	0.950	0.967
C3	C2	1.541	1.532
C2	C1	1.541	1.531
C2	H2	1.099	1.090
O3	C3	1.431	1.429
C3	C4	1.535	1.531
C3	H3	1.100	1.090
O3	HO3	0.950	0.967
O4	C4	1.419	1.429
C4	C5	1.543	1.531
C4	H4	1.100	1.090
O4	HO4	0.950	0.967
C5	C6	1.541	1.530
C5	O5	1.440	1.429
C5	H5	1.100	1.090
O6	C6	1.432	1.429
C6	H61	1.100	1.091
C6	H62	1.100	1.091
O6	HO6	0.950	0.967
C1	O5	1.464	1.429
C1	N1	1.488	1.465
C1	H1	1.100	1.090
N1	C7	1.331	1.348
N1	HN1	1.000	0.970
C7	O7	1.227	1.213
C7	C9	1.530	1.507
O9	C9	1.426	1.429
C9	H9	1.100	1.090
C9	H9A	1.100	1.091
O9	HO9	0.950	0.967

Bond Angles for 9GP

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	O2	HO2	109.5	114.0
O2	C2	C1	110.2	109.5
O2	C2	H2	108.1	109.5
C3	C2	C1	111.1	109.2
C3	C2	H2	107.2	109.6
C1	C2	H2	108.6	109.5
C2	C1	O5	111.9	109.4
C2	C1	N1	108.0	109.5
C2	C1	H1	109.0	109.5
O3	C3	C4	109.5	109.5
O3	C3	H3	109.2	109.6
C4	C3	H3	109.3	109.6
C3	C4	C5	111.2	109.2
C3	C4	H4	108.8	109.6
O4	C4	C5	110.2	109.5
O4	C4	H4	109.9	109.6
C5	C4	H4	107.6	109.5
C4	C5	C6	112.6	109.5
C4	C5	O5	109.7	109.4
C4	C5	H5	106.2	109.5
C6	C5	O5	106.4	109.5
C6	C5	H5	109.5	109.5
C5	C6	H61	109.2	109.5
C5	C6	H62	109.1	109.5
O5	C5	H5	112.4	109.5
O6	C6	H61	109.3	109.5
O6	C6	H62	109.1	109.5
H61	C6	H62	110.0	109.4
N1	C1	H1	111.2	109.5
C1	N1	C7	119.1	120.0
C1	N1	HN1	120.4	120.0
C7	N1	HN1	120.4	120.0
N1	C7	O7	123.5	120.0
N1	C7	C9	115.9	120.0
O7	C7	C9	120.6	120.0
C7	C9	H9	108.7	109.4
C7	C9	H9A	108.2	109.5
O9	C9	H9	108.7	109.5
O9	C9	H9A	108.1	109.4
H9	C9	H9A	111.3	109.5

Torsion Angles for 9GP

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C3	C2	O2	C1	123.9	119.7
C3	C2	O2	H2	242.4	239.8
C1	C2	O2	H2	118.5	120.1
O2	C2	C1	O5	176.5	177.5
O2	C2	C1	N1	297.3	297.5
O2	C2	C1	H1	58.2	57.6
HO2	O2	C2	C1	3.4	59.9
HO2	O2	C2	H2	244.9	299.9
C3	C2	O2	HO2	127.3	179.6
O2	C2	C3	C1	236.6	240.1
O2	C2	C3	H2	118.1	120.2
C1	C2	C3	H2	241.5	240.1
C3	C2	C1	O5	52.4	57.6
C3	C2	C1	N1	173.2	177.6
C3	C2	C1	H1	294.0	297.6
C1	C2	O2	HO2	3.4	59.9
O2	C2	C1	H2	241.8	239.9
C3	C2	C1	H2	117.6	120.0
N1	C1	C2	H1	239.2	239.9
C2	C1	N1	C7	141.4	145.0
C2	C1	N1	HN1	321.4	325.0
H2	C2	O2	HO2	244.9	299.9
O2	C2	H2	C1	119.6	120.1
C3	C2	H2	C1	239.9	240.3
H2	C2	C1	O5	294.7	297.6
H2	C2	C1	N1	55.5	57.6
H2	C2	C1	H1	176.4	177.7
O3	C3	C2	C1	188.5	183.2
O3	C3	C2	H2	306.9	303.1
C4	C3	O3	H3	119.7	120.3
O3	C3	C4	C5	174.9	176.9
O3	C3	C4	H4	56.5	56.9
C4	C3	C2	C1	309.2	303.0
C4	C3	C2	H2	67.7	62.9
O3	C3	C4	H3	240.4	239.7
O4	C4	C3	C5	121.7	119.8
O4	C4	C3	H4	240.1	239.8
C5	C4	C3	H4	118.4	119.9
C3	C4	C5	C6	183.7	182.4
C3	C4	C5	O5	302.1	302.3
C3	C4	C5	H5	63.8	62.3
H3	C3	C2	C1	68.9	62.9
H3	C3	C2	H2	187.3	182.8
O3	C3	H3	C4	119.8	120.3
H3	C3	C4	C5	294.5	297.2
H3	C3	C4	H4	176.1	177.3
HO3	O3	C3	C4	82.6	180.5
HO3	O3	C3	H3	322.9	60.2
O4	C4	C3	H3	56.2	57.0
C3	C4	O4	C5	237.7	240.4
C3	C4	O4	H4	119.2	120.2
C5	C4	O4	H4	241.5	239.9
O4	C4	C5	C6	62.7	62.5
O4	C4	C5	O5	181.1	182.5
O4	C4	C5	H5	302.8	302.4
C5	C4	C3	H3	294.5	297.2
C3	C4	C5	H4	240.9	240.0
O4	C4	C5	H4	119.9	120.2
C6	C5	C4	O5	241.6	240.1
C6	C5	C4	H5	119.9	120.1
C4	C5	C6	H61	175.0	305.0
C4	C5	C6	H62	295.2	64.9
O5	C5	C4	H5	238.3	240.0
H4	C4	C3	H3	176.1	177.3
C3	C4	H4	C5	120.7	119.7
O4	C4	H4	C5	240.0	239.9
H4	C4	C5	C6	302.9	302.3
H4	C4	C5	O5	61.2	62.3
H4	C4	C5	H5	183.0	182.3
HO4	O4	C4	C5	14.1	179.7
HO4	O4	C4	H4	132.6	299.8
C6	C5	C4	H4	302.9	302.3
C4	C5	C6	O5	120.3	119.9
C4	C5	C6	H5	242.0	239.9
O5	C5	C6	H5	121.8	120.0
O6	C6	C5	H61	240.0	240.0
O6	C6	C5	H62	119.7	120.1
H61	C6	C5	H62	239.7	240.1
C2	C1	O5	C5	302.0	298.8
O5	C5	C4	H4	61.2	62.3
C4	C5	O5	C6	237.9	240.0
C4	C5	O5	H5	117.9	120.0
C6	C5	O5	H5	240.1	240.0
O5	C5	C6	H61	54.7	185.1
O5	C5	C6	H62	175.0	305.0
H5	C5	C4	H4	183.0	182.3
C4	C5	H5	C6	121.9	120.1
C4	C5	H5	O5	240.0	240.1
C6	C5	H5	O5	118.1	120.0
H5	C5	C6	H61	292.9	65.1
H5	C5	C6	H62	53.2	185.0
O6	C6	C5	O5	294.7	65.1
O6	C6	C5	H5	172.9	305.0
C5	C6	O6	H61	120.0	120.0
C5	C6	O6	H62	240.3	240.0
H61	C6	O6	H62	120.3	120.0
H61	C6	C5	O5	54.7	185.1
H61	C6	C5	H5	292.9	65.1
C5	C6	H61	H62	119.8	119.9
O6	C6	H61	H62	240.3	240.0
H62	C6	C5	O5	175.0	305.0
H62	C6	C5	H5	53.2	185.0
C5	C6	H62	H61	240.2	240.1
O6	C6	H62	H61	119.8	120.0
HO6	O6	C6	H61	162.4	60.0
HO6	O6	C6	H62	42.2	300.0
O5	C1	C2	H2	294.7	297.6
C2	C1	O5	N1	119.8	120.0
C2	C1	O5	H1	240.6	240.0
C1	O5	C5	H5	301.9	301.2
N1	C1	C2	H2	55.5	57.6
C2	C1	N1	O5	237.8	240.1
C2	C1	N1	H1	119.5	120.0
C7	N1	C1	HN1	180.0	180.0
C1	N1	C7	O7	0.5	360.0
C1	N1	C7	C9	180.5	180.0
H1	C1	C2	H2	176.4	177.7
C2	C1	H1	O5	121.2	119.9
C2	C1	H1	N1	241.1	240.0
H1	C1	N1	C7	21.9	25.0
H1	C1	N1	HN1	201.9	205.0
C7	N1	C1	H1	21.9	25.0
C1	N1	C7	HN1	180.0	180.0
O7	C7	N1	C9	179.9	180.0
N1	C7	C9	H9	99.5	300.0
N1	C7	C9	H9A	220.5	60.0
HN1	N1	C1	H1	201.9	205.0
C1	N1	HN1	C7	180.0	180.0
HN1	N1	C7	O7	180.4	180.0
HN1	N1	C7	C9	0.5	0.0
O7	C7	N1	HN1	180.4	180.0
N1	C7	O7	C9	180.1	180.0
O7	C7	C9	H9	279.5	120.0
O7	C7	C9	H9A	40.6	240.0
C9	C7	N1	HN1	0.5	0.0
N1	C7	C9	O7	179.9	180.0
O9	C9	C7	H9	240.0	240.0
O9	C9	C7	H9A	119.0	120.0
H9	C9	C7	H9A	239.0	240.0
C7	C9	O9	H9	120.0	120.0
C7	C9	O9	H9A	241.0	240.0
H9	C9	O9	H9A	121.0	120.0
C7	C9	H9	H9A	119.0	120.0
O9	C9	H9	H9A	241.0	240.0
C7	C9	H9A	H9	240.7	240.0
O9	C9	H9A	H9	119.3	120.0
HO9	O9	C9	H9	274.3	60.0
HO9	O9	C9	H9A	153.2	300.0