PDB Chemical Component 9G5
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9G5
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C |
N |
1.483 |
1.469 |
C1 |
N |
1.495 |
1.452 |
C1 |
C2 |
1.536 |
1.512 |
N |
C5 |
1.479 |
1.415 |
C2 |
C3 |
1.534 |
1.538 |
C5 |
C4 |
1.537 |
1.548 |
C3 |
N1 |
1.452 |
1.476 |
C4 |
N1 |
1.463 |
1.449 |
N1 |
C6 |
1.357 |
1.348 |
O |
C6 |
1.243 |
1.216 |
C6 |
C7 |
1.520 |
1.478 |
C7 |
C12 |
1.389 |
1.392 |
C7 |
C8 |
1.388 |
1.397 |
C12 |
C11 |
1.391 |
1.395 |
C8 |
C9 |
1.396 |
1.381 |
C14 |
C15 |
1.379 |
1.396 |
C14 |
C13 |
1.393 |
1.377 |
C11 |
C13 |
1.468 |
1.476 |
C11 |
C10 |
1.368 |
1.398 |
C15 |
C16 |
1.374 |
1.386 |
C13 |
O1 |
1.374 |
1.344 |
C9 |
C10 |
1.384 |
1.381 |
C16 |
O1 |
1.345 |
1.351 |
C16 |
C17 |
1.470 |
1.406 |
C17 |
C18 |
1.476 |
1.384 |
C18 |
C19 |
1.476 |
1.479 |
C18 |
C25 |
1.426 |
1.468 |
C24 |
C19 |
1.389 |
1.391 |
C24 |
C23 |
1.363 |
1.382 |
C19 |
C20 |
1.452 |
1.401 |
O2 |
C25 |
1.296 |
1.219 |
CL |
C23 |
1.768 |
1.736 |
C25 |
N2 |
1.339 |
1.343 |
C23 |
C22 |
1.360 |
1.385 |
C20 |
N2 |
1.360 |
1.390 |
C20 |
C21 |
1.373 |
1.390 |
C22 |
C21 |
1.385 |
1.380 |
C4 |
H1 |
1.100 |
1.090 |
C4 |
H2 |
1.099 |
1.089 |
C5 |
H3 |
1.100 |
1.090 |
C5 |
H4 |
1.099 |
1.090 |
C8 |
H5 |
1.080 |
1.080 |
C10 |
H6 |
1.080 |
1.080 |
C15 |
H7 |
1.080 |
1.080 |
C17 |
H8 |
1.080 |
1.080 |
C21 |
H9 |
1.080 |
1.081 |
C22 |
H10 |
1.080 |
1.080 |
C24 |
H11 |
1.080 |
1.080 |
N2 |
H12 |
1.000 |
0.970 |
C14 |
H13 |
1.080 |
1.080 |
C9 |
H14 |
1.080 |
1.080 |
C12 |
H15 |
1.080 |
1.080 |
C3 |
H16 |
1.100 |
1.090 |
C3 |
H17 |
1.100 |
1.090 |
C2 |
H18 |
1.100 |
1.090 |
C2 |
H19 |
1.100 |
1.090 |
C1 |
H20 |
1.100 |
1.091 |
C1 |
H21 |
1.100 |
1.090 |
C |
H23 |
1.100 |
1.090 |
C |
H24 |
1.099 |
1.090 |
C |
H25 |
1.100 |
1.090 |
Bond Angles for 9G5
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N |
C1 |
H20 |
107.7 |
109.5 |
N |
C1 |
H21 |
107.6 |
109.5 |
C1 |
C2 |
H18 |
108.6 |
109.5 |
C1 |
C2 |
H19 |
108.6 |
109.4 |
N |
C5 |
H3 |
108.8 |
109.4 |
N |
C5 |
H4 |
108.8 |
109.3 |
C2 |
C3 |
H16 |
110.9 |
109.1 |
C2 |
C3 |
H17 |
110.9 |
109.1 |
C5 |
C4 |
H1 |
110.6 |
109.4 |
C5 |
C4 |
H2 |
110.6 |
109.4 |
C4 |
N1 |
C6 |
123.5 |
118.7 |
N1 |
C6 |
C7 |
124.3 |
120.1 |
C6 |
C7 |
C12 |
120.6 |
120.1 |
C6 |
C7 |
C8 |
120.8 |
120.0 |
C8 |
C7 |
C12 |
118.5 |
119.9 |
C7 |
C12 |
C11 |
120.5 |
119.7 |
C7 |
C12 |
H15 |
119.7 |
120.1 |
C7 |
C8 |
C9 |
119.9 |
120.2 |
C7 |
C8 |
H5 |
120.0 |
119.9 |
C8 |
C9 |
C10 |
121.3 |
120.3 |
C9 |
C8 |
H5 |
120.0 |
119.9 |
C8 |
C9 |
H14 |
119.3 |
119.9 |
C14 |
C15 |
H7 |
127.9 |
126.6 |
C14 |
C13 |
O1 |
109.5 |
108.6 |
C11 |
C10 |
H6 |
120.9 |
119.9 |
C15 |
C16 |
O1 |
113.5 |
108.2 |
C15 |
C16 |
C17 |
123.7 |
125.9 |
C16 |
C15 |
H7 |
127.9 |
126.6 |
C13 |
O1 |
C16 |
104.4 |
109.4 |
C9 |
C10 |
H6 |
120.9 |
119.9 |
C16 |
C17 |
H8 |
116.6 |
120.0 |
C17 |
C18 |
C19 |
131.3 |
127.4 |
C17 |
C18 |
C25 |
123.7 |
127.5 |
C18 |
C17 |
H8 |
116.6 |
120.0 |
C23 |
C24 |
C19 |
120.1 |
119.7 |
C19 |
C24 |
H11 |
120.0 |
120.2 |
C23 |
C24 |
H11 |
120.0 |
120.1 |
O2 |
C25 |
N2 |
124.4 |
126.0 |
C20 |
N2 |
C25 |
108.6 |
111.4 |
C25 |
N2 |
H12 |
125.7 |
124.4 |
C23 |
C22 |
H10 |
120.5 |
119.7 |
C21 |
C20 |
N2 |
131.7 |
131.8 |
C20 |
N2 |
H12 |
125.7 |
124.3 |
C20 |
C21 |
H9 |
118.9 |
119.9 |
C22 |
C21 |
H9 |
118.9 |
119.9 |
H1 |
C4 |
H2 |
109.5 |
109.5 |
H3 |
C5 |
H4 |
109.5 |
109.4 |
H16 |
C3 |
H17 |
109.5 |
109.2 |
H18 |
C2 |
H19 |
109.5 |
109.4 |
H20 |
C1 |
H21 |
109.5 |
109.6 |
H23 |
C |
H24 |
109.4 |
109.5 |
H23 |
C |
H25 |
109.5 |
109.5 |
H24 |
C |
H25 |
109.5 |
109.4 |
Torsion Angles for 9G5
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C |
N |
C1 |
H20 |
19.2 |
25.1 |
C |
N |
C1 |
H21 |
137.2 |
264.9 |
C |
N |
C5 |
H3 |
296.9 |
71.6 |
C |
N |
C5 |
H4 |
56.1 |
311.8 |
N |
C1 |
C2 |
H18 |
37.4 |
332.5 |
N |
C1 |
C2 |
H19 |
156.3 |
212.6 |
C1 |
N |
C5 |
H3 |
167.6 |
303.5 |
C1 |
N |
C5 |
H4 |
286.8 |
183.8 |
H20 |
C1 |
N |
H21 |
242.1 |
120.2 |
C1 |
C2 |
C3 |
H16 |
200.0 |
199.5 |
C1 |
C2 |
C3 |
H17 |
321.9 |
80.4 |
H18 |
C2 |
C1 |
H19 |
241.0 |
119.9 |
N |
C5 |
C4 |
H1 |
25.6 |
170.2 |
N |
C5 |
C4 |
H2 |
147.1 |
50.3 |
H3 |
C5 |
N |
H4 |
240.8 |
119.7 |
H16 |
C3 |
C2 |
H17 |
238.1 |
119.2 |
C5 |
C4 |
N1 |
C6 |
276.9 |
269.7 |
H1 |
C4 |
C5 |
H2 |
238.5 |
119.9 |
C4 |
N1 |
C6 |
C7 |
300.2 |
351.2 |
N1 |
C6 |
C7 |
C12 |
84.4 |
225.6 |
N1 |
C6 |
C7 |
C8 |
260.9 |
45.9 |
C8 |
C7 |
C6 |
C12 |
176.5 |
180.2 |
C6 |
C7 |
C12 |
C11 |
179.6 |
179.9 |
C6 |
C7 |
C12 |
H15 |
359.6 |
360.0 |
C6 |
C7 |
C8 |
C9 |
182.0 |
180.1 |
C6 |
C7 |
C8 |
H5 |
2.0 |
0.1 |
C6 |
C7 |
C12 |
C8 |
176.6 |
180.2 |
C12 |
C7 |
C8 |
C9 |
358.6 |
0.3 |
C12 |
C7 |
C8 |
H5 |
178.6 |
180.3 |
C6 |
C7 |
C8 |
C12 |
183.5 |
179.8 |
C8 |
C7 |
C12 |
C11 |
3.0 |
359.7 |
C8 |
C7 |
C12 |
H15 |
183.0 |
179.7 |
C7 |
C8 |
C9 |
C10 |
1.5 |
360.0 |
C9 |
C8 |
C7 |
H5 |
180.0 |
180.0 |
C7 |
C8 |
C9 |
H14 |
181.6 |
180.0 |
C7 |
C12 |
C11 |
H15 |
180.0 |
180.0 |
C12 |
C11 |
C10 |
H6 |
184.8 |
180.0 |
C9 |
C8 |
C7 |
C12 |
358.6 |
0.3 |
C7 |
C8 |
C9 |
H5 |
180.0 |
180.0 |
C8 |
C9 |
C10 |
H6 |
176.8 |
180.0 |
C15 |
C14 |
C13 |
O1 |
358.9 |
360.0 |
C14 |
C15 |
C16 |
O1 |
351.4 |
360.0 |
C16 |
C15 |
C14 |
H7 |
180.0 |
180.0 |
C14 |
C13 |
O1 |
C16 |
356.0 |
360.0 |
C7 |
C12 |
C11 |
C13 |
179.9 |
179.9 |
C13 |
C11 |
C10 |
H6 |
0.1 |
0.1 |
C7 |
C12 |
C11 |
C10 |
355.2 |
0.0 |
C8 |
C9 |
C10 |
C11 |
356.8 |
359.8 |
C9 |
C10 |
C11 |
H6 |
180.0 |
180.3 |
C14 |
C15 |
C16 |
H7 |
180.0 |
180.0 |
C13 |
O1 |
C16 |
C15 |
7.9 |
0.0 |
C15 |
C16 |
C17 |
H8 |
5.3 |
38.5 |
C15 |
C16 |
O1 |
C13 |
7.9 |
0.0 |
C10 |
C9 |
C8 |
H5 |
181.6 |
180.0 |
C8 |
C9 |
C10 |
H14 |
180.0 |
180.0 |
C11 |
C10 |
C9 |
H6 |
180.0 |
179.7 |
C15 |
C16 |
O1 |
C17 |
192.3 |
180.1 |
O1 |
C16 |
C15 |
H7 |
171.4 |
180.0 |
O1 |
C16 |
C17 |
H8 |
198.9 |
218.5 |
C15 |
C16 |
C17 |
O1 |
166.5 |
179.9 |
C17 |
C16 |
C15 |
H7 |
4.0 |
0.0 |
C13 |
O1 |
C16 |
C17 |
175.7 |
180.0 |
C18 |
C17 |
C16 |
H8 |
180.0 |
180.0 |
C15 |
C16 |
C17 |
C18 |
185.3 |
218.5 |
C16 |
C17 |
C18 |
H8 |
180.0 |
180.0 |
C17 |
C18 |
C19 |
C25 |
183.7 |
180.7 |
C19 |
C18 |
C17 |
H8 |
179.8 |
189.0 |
C18 |
C19 |
C24 |
H11 |
357.5 |
0.6 |
C17 |
C18 |
C25 |
C19 |
176.6 |
179.3 |
C25 |
C18 |
C17 |
H8 |
4.1 |
9.9 |
C18 |
C25 |
N2 |
H12 |
180.3 |
179.7 |
C17 |
C18 |
C19 |
C24 |
5.7 |
0.0 |
C23 |
C24 |
C19 |
H11 |
180.0 |
179.3 |
C19 |
C24 |
C23 |
H11 |
180.0 |
180.7 |
C24 |
C23 |
C22 |
H10 |
177.0 |
179.9 |
C17 |
C18 |
C19 |
C20 |
182.0 |
180.6 |
C19 |
C20 |
N2 |
H12 |
178.5 |
180.2 |
C19 |
C20 |
C21 |
H9 |
179.9 |
179.8 |
C17 |
C18 |
C25 |
O2 |
358.4 |
359.3 |
C20 |
N2 |
C25 |
O2 |
179.5 |
180.0 |
O2 |
C25 |
N2 |
H12 |
359.5 |
360.0 |
CL |
C23 |
C24 |
C19 |
177.6 |
180.0 |
CL |
C23 |
C24 |
H11 |
357.5 |
359.3 |
CL |
C23 |
C22 |
H10 |
0.3 |
0.4 |
C17 |
C18 |
C25 |
N2 |
177.6 |
179.6 |
C21 |
C20 |
N2 |
C25 |
179.9 |
180.0 |
C20 |
N2 |
C25 |
H12 |
180.0 |
180.0 |
C23 |
C22 |
C21 |
H9 |
182.6 |
180.0 |
O2 |
C25 |
N2 |
C20 |
179.5 |
180.0 |
C25 |
N2 |
C20 |
H12 |
180.0 |
180.0 |
N2 |
C20 |
C21 |
H9 |
358.4 |
0.0 |
C21 |
C20 |
N2 |
H12 |
359.9 |
360.0 |
C22 |
C21 |
C20 |
H9 |
180.0 |
179.9 |
C22 |
C21 |
C20 |
N2 |
178.4 |
180.0 |
C20 |
C21 |
C22 |
H9 |
180.0 |
180.1 |
C5 |
C4 |
H1 |
H2 |
122.2 |
240.1 |
H1 |
C4 |
N1 |
C6 |
157.7 |
29.8 |
C5 |
C4 |
H2 |
H1 |
237.9 |
119.9 |
H2 |
C4 |
N1 |
C6 |
36.2 |
149.7 |
N |
C5 |
H3 |
H4 |
118.7 |
240.3 |
H3 |
C5 |
C4 |
H1 |
265.2 |
290.4 |
H3 |
C5 |
C4 |
H2 |
26.7 |
170.4 |
N |
C5 |
H4 |
H3 |
241.3 |
119.7 |
H4 |
C5 |
C4 |
H1 |
146.0 |
50.2 |
H4 |
C5 |
C4 |
H2 |
267.5 |
290.3 |
H5 |
C8 |
C7 |
C12 |
178.6 |
180.3 |
C7 |
C8 |
H5 |
C9 |
180.0 |
180.0 |
H5 |
C8 |
C9 |
C10 |
181.6 |
180.0 |
H5 |
C8 |
C9 |
H14 |
1.6 |
360.0 |
H7 |
C15 |
C16 |
O1 |
171.4 |
180.0 |
H7 |
C15 |
C16 |
C17 |
4.0 |
0.0 |
H8 |
C17 |
C18 |
C19 |
179.8 |
189.0 |
H8 |
C17 |
C18 |
C25 |
4.1 |
9.9 |
H9 |
C21 |
C20 |
N2 |
358.4 |
0.0 |
H10 |
C22 |
C21 |
H9 |
2.5 |
359.9 |
C23 |
C24 |
H11 |
C19 |
180.0 |
180.7 |
C20 |
N2 |
H12 |
C25 |
180.0 |
180.0 |
H13 |
C14 |
C15 |
H7 |
5.5 |
0.0 |
H13 |
C14 |
C13 |
O1 |
178.9 |
180.0 |
C8 |
C9 |
H14 |
C10 |
180.0 |
180.0 |
H14 |
C9 |
C8 |
H5 |
1.6 |
360.0 |
H14 |
C9 |
C10 |
H6 |
356.8 |
0.0 |
C7 |
C12 |
H15 |
C11 |
180.0 |
180.0 |
C2 |
C3 |
H16 |
H17 |
122.7 |
240.9 |
C2 |
C3 |
H17 |
H16 |
237.2 |
119.1 |
C1 |
C2 |
H18 |
H19 |
118.4 |
240.0 |
H18 |
C2 |
C3 |
H16 |
79.5 |
319.6 |
H18 |
C2 |
C3 |
H17 |
201.4 |
200.5 |
C1 |
C2 |
H19 |
H18 |
241.6 |
120.0 |
H19 |
C2 |
C3 |
H16 |
320.5 |
79.5 |
H19 |
C2 |
C3 |
H17 |
82.4 |
320.3 |
N |
C1 |
H20 |
H21 |
116.7 |
239.8 |
H20 |
C1 |
C2 |
H18 |
276.3 |
92.4 |
H20 |
C1 |
C2 |
H19 |
35.3 |
332.4 |
N |
C1 |
H21 |
H20 |
243.2 |
120.2 |
H21 |
C1 |
C2 |
H18 |
158.4 |
212.5 |
H21 |
C1 |
C2 |
H19 |
277.3 |
92.6 |
H24 |
C |
H23 |
H25 |
120.0 |
119.9 |
H23 |
C |
H24 |
H25 |
240.0 |
240.0 |
H23 |
C |
H25 |
H24 |
120.0 |
120.0 |