Atom Nomenclature for 9G4

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9G4

Atom Name (V3) Atom Name (V2)
CL CL
C17 C17
C16 C16
C15 C15
C18 C18
C19 C19
C14 C14
O3 O3
C11 C11
C10 C10
C9 C9
O1 O1
C12 C12
C13 C13
N3 N3
O2 O2
N2 N2
N1 N1
C6 C6
C5 C5
C4 C4
C7 C7
C8 C8
C3 C3
C2 C2
N N
C1 C1
O O
C C
H16 H16
H18 H18
H15 H15
H19 H19
H10 H10
H31N H31N
H32N H32N
H5 H5
H7 H7
H4 H4
H8 H8
H21C H21C
H22C H22C
H H
HC1 HC1
HC2 HC2
HC3 HC3