Atom Nomenclature for 9F9

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9F9

Atom Name (V3) Atom Name (V2)
C01 C01
O05 O05
C06 C06
C07 C07
C09 C09
C11 C11
C13 C13
C15 C15
C16 C16
O17 O17
N18 N18
C20 C20
C21 C21
C23 C23
N24 N24
C25 C25
C29 C29
O30 O30
N31 N31
C32 C32
C36 C36
C37 C37
C39 C39
N40 N40
C41 C41
C44 C44
C47 C47
C50 C50
C53 C53
H011 H011
H012 H012
H013 H013
H07 H07
H09 H09
H11 H11
H13 H13
H18 H18
H21 H21
H251 H251
H252 H252
H253 H253
H321 H321
H322 H322
H323 H323
H37 H37
H411 H411
H412 H412
H531 H531
H532 H532
H441 H441
H442 H442
H471 H471
H472 H472
H501 H501
H502 H502