PDB Chemical Component 9EJ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 9EJ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C13 C11 1.545 1.530
C14 C17 1.524 1.530
C14 N12 1.478 1.469
C37 C38 1.374 1.338
C37 C36 1.427 1.376
C38 S39 1.706 1.759
C15 N12 1.474 1.469
C15 C16 1.529 1.529
N12 C11 1.495 1.469
C11 C10 1.552 1.530
C36 C35 1.383 1.351
S39 C35 1.726 1.759
C10 N08 1.455 1.465
C35 C33 1.462 1.473
N08 C07 1.384 1.347
C33 C32 1.500 1.414
C33 N34 1.304 1.325
O09 C07 1.228 1.215
C07 C02 1.484 1.482
C32 C31 1.338 1.351
N34 C30 1.363 1.334
C02 C01 1.391 1.396
C02 C03 1.397 1.397
C01 C06 1.387 1.394
C31 N29 1.389 1.369
C30 N29 1.393 1.370
C30 C18 1.387 1.404
C03 C04 1.395 1.391
N29 N28 1.355 1.400
C06 C18 1.454 1.478
C06 N05 1.354 1.329
C18 C27 1.409 1.401
C26 N25 1.444 1.465
O24 C23 1.234 1.213
C04 N05 1.359 1.323
C04 N19 1.403 1.390
N28 C27 1.331 1.310
N25 C23 1.389 1.347
C23 C22 1.563 1.507
N19 C22 1.433 1.480
N19 C20 1.421 1.480
C22 C21 1.540 1.539
C20 C21 1.526 1.539
C10 H1 1.100 1.090
C10 H2 1.100 1.090
C13 H4 1.100 1.090
C13 H5 1.100 1.089
C13 H6 1.100 1.091
C15 H7 1.100 1.089
C15 H8 1.100 1.091
C17 H9 1.100 1.090
C17 H10 1.100 1.089
C17 H11 1.100 1.090
C20 H12 1.100 1.090
C20 H13 1.100 1.089
C21 H14 1.100 1.090
C21 H15 1.100 1.091
C22 H16 1.100 1.090
C26 H17 1.100 1.090
C26 H18 1.100 1.090
C26 H19 1.100 1.089
C01 H20 1.080 1.080
C03 H21 1.080 1.080
N08 H22 1.000 0.970
C11 H23 1.100 1.091
C14 H24 1.100 1.090
C14 H25 1.100 1.090
C16 H26 1.100 1.090
C16 H27 1.100 1.090
C16 H28 1.100 1.090
N25 H29 1.000 0.970
C27 H30 1.080 1.080
C31 H31 1.080 1.079
C32 H32 1.080 1.080
C36 H33 1.080 1.080
C37 H34 1.080 1.081
C38 H35 1.080 1.080

Bond Angles for 9EJ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N12 C11 C13 110.0 109.5
C11 C13 H4 109.5 109.5
C11 C13 H5 109.5 109.5
C11 C13 H6 109.4 109.5
C13 C11 H23 107.5 109.5
C14 C17 H9 109.5 109.4
C14 C17 H10 109.5 109.5
C14 C17 H11 109.5 109.4
C37 C38 S39 111.9 109.7
C38 C37 H34 124.0 122.4
C37 C38 H35 124.0 125.1
C37 C36 H33 123.5 122.7
S39 C38 H35 124.0 125.2
C15 N12 C11 115.1 111.0
C16 C15 H7 108.1 109.5
C16 C15 H8 108.1 109.5
C15 C16 H26 109.5 109.5
C15 C16 H27 109.5 109.5
C15 C16 H28 109.5 109.5
N12 C11 H23 108.1 109.5
C11 C10 H1 109.1 109.4
C11 C10 H2 109.1 109.5
C10 N08 C07 123.1 120.0
N08 C10 H1 109.1 109.5
N08 C10 H2 109.1 109.5
C10 N08 H22 118.4 120.0
C33 C32 H32 122.0 120.4
C32 C31 H31 119.7 120.4
C02 C01 C06 118.5 119.1
C02 C01 H20 120.8 120.5
C02 C03 C04 119.0 119.2
C02 C03 H21 120.5 120.4
C01 C06 C18 123.0 119.7
C01 C06 N05 122.2 120.7
C06 C01 H20 120.8 120.4
C03 C04 N05 121.0 120.9
C03 C04 N19 120.9 119.5
C04 C03 H21 120.5 120.4
C06 C18 C27 129.1 126.4
C18 C27 H30 123.3 125.6
C26 N25 C23 122.2 120.0
N25 C26 H17 109.5 109.5
N25 C26 H18 109.5 109.4
N25 C26 H19 109.5 109.5
C26 N25 H29 118.9 120.0
N05 C04 N19 118.1 119.6
N28 C27 H30 123.3 125.5
C23 C22 H16 110.9 113.0
N19 C22 H16 112.9 113.7
N19 C20 H12 114.4 113.7
N19 C20 H13 114.4 113.8
C22 C21 H14 114.7 113.7
C22 C21 H15 114.7 113.8
C21 C20 H12 114.4 113.8
C21 C20 H13 114.4 113.7
C20 C21 H14 114.6 113.7
C20 C21 H15 114.7 113.7
H1 C10 H2 109.5 109.4
H4 C13 H5 109.5 109.5
H4 C13 H6 109.5 109.5
H5 C13 H6 109.5 109.5
H7 C15 H8 109.5 109.5
H9 C17 H10 109.4 109.5
H9 C17 H11 109.5 109.5
H10 C17 H11 109.5 109.5
H12 C20 H13 109.5 113.0
H14 C21 H15 109.4 112.9
H17 C26 H18 109.4 109.4
H17 C26 H19 109.5 109.5
H18 C26 H19 109.5 109.5
H24 C14 H25 109.5 109.4
H26 C16 H27 109.5 109.5
H26 C16 H28 109.5 109.5
H27 C16 H28 109.4 109.4

Torsion Angles for 9EJ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C15 N12 C11 C13 324.8 70.2
N12 C11 C13 H23 242.4 240.0
C13 C11 C10 H1 310.3 54.2
C13 C11 C10 H2 69.9 294.2
H4 C13 C11 H5 240.0 240.0
H4 C13 C11 H6 120.0 120.0
H5 C13 C11 H6 240.0 240.0
H9 C17 C14 H10 240.0 240.0
H9 C17 C14 H11 120.0 119.9
H10 C17 C14 H11 240.0 239.9
C14 N12 C11 H23 337.0 186.3
C38 C37 C36 H33 179.8 180.1
S39 C38 C37 H35 180.0 179.7
S39 C38 C37 H34 180.1 180.1
C37 C38 S39 H35 180.0 180.3
C15 N12 C11 H23 207.6 310.2
C16 C15 N12 C11 196.4 71.7
H7 C15 C16 H8 118.4 120.0
H26 C16 C15 H27 240.0 240.0
H26 C16 C15 H28 120.0 120.0
H27 C16 C15 H28 240.0 240.0
N12 C11 C13 H4 180.0 300.0
N12 C11 C13 H5 300.0 60.0
N12 C11 C13 H6 60.0 180.0
C13 C11 N12 H23 117.2 120.0
N12 C11 C10 H1 186.6 294.1
N12 C11 C10 H2 306.2 174.2
N08 C10 C11 H1 239.8 120.0
N08 C10 C11 H2 120.2 240.0
C11 C10 N08 H22 105.6 355.2
H1 C10 C11 H2 240.4 119.9
C11 C10 N08 H1 120.2 240.0
C11 C10 N08 H2 239.8 120.0
H1 C10 N08 H2 119.6 240.0
C35 C33 C32 H32 0.1 0.0
C07 N08 C10 H1 165.4 295.3
C07 N08 C10 H2 45.9 55.3
C10 N08 C07 H22 180.0 179.9
C33 C32 C31 H31 180.2 180.0
N34 C33 C32 H32 179.8 179.6
C10 N08 C07 C02 179.5 180.0
C07 C02 C01 H20 359.9 359.6
C07 C02 C03 H21 0.2 360.0
C02 C01 C06 C18 180.2 179.7
C02 C01 C06 N05 359.9 359.9
C06 C01 C02 H20 180.0 180.4
C03 C02 C01 C06 0.1 0.1
C03 C02 C01 H20 180.1 179.7
C02 C03 C04 N05 359.9 359.9
C02 C03 C04 N19 180.2 180.0
C04 C03 C02 H21 180.0 180.1
C02 C01 C06 H20 180.0 179.6
C01 C06 C18 C27 187.8 313.7
C30 C18 C27 H30 179.9 180.3
C02 C03 C04 H21 180.0 179.9
N05 C04 C03 N19 179.7 179.9
N29 N28 C27 H30 180.1 179.9
C01 C06 C18 N05 179.7 180.2
C18 C06 C01 H20 0.2 0.1
C06 C18 C27 H30 0.3 0.0
C01 C06 N05 C18 180.3 179.8
N05 C06 C01 H20 179.9 180.3
C06 N05 C04 N19 179.8 180.0
N28 C27 C18 H30 180.0 179.9
H17 C26 N25 H18 240.0 240.1
H17 C26 N25 H19 120.0 120.0
H18 C26 N25 H19 240.0 239.9
C26 N25 C23 O24 0.2 5.3
O24 C23 C22 H16 192.8 233.8
C01 C06 N05 C04 0.1 0.0
C03 C04 N05 N19 180.3 180.1
N05 C04 C03 H21 179.9 180.0
C03 C04 N19 N05 179.7 179.9
N19 C04 C03 H21 0.2 0.1
C04 N19 C22 H16 40.5 23.2
C04 N19 C20 H12 322.1 108.2
C04 N19 C20 H13 89.6 336.8
C18 C27 N28 H30 180.0 180.1
C23 N25 C26 H17 180.0 180.0
C23 N25 C26 H18 300.0 299.9
C23 N25 C26 H19 60.0 60.0
C26 N25 C23 H29 180.0 180.1
N25 C23 C22 H16 13.1 53.8
N19 C22 C23 H16 130.9 131.7
C23 C22 C21 H14 3.5 107.5
C23 C22 C21 H15 131.4 336.2
C23 C22 N19 H16 230.0 228.7
C22 N19 C20 H12 122.6 221.0
C22 N19 C20 H13 250.1 89.6
N19 C22 C21 H14 121.9 221.9
N19 C22 C21 H15 249.8 90.7
C21 C20 N19 H12 243.7 114.3
C21 C20 N19 H13 116.2 245.7
N19 C20 C21 H14 238.1 138.1
N19 C20 C21 H15 110.2 269.2
H12 C20 N19 H13 232.5 131.4
C22 C21 C20 H12 237.9 138.0
C22 C21 C20 H13 110.4 269.3
C20 C21 C22 H14 244.0 114.4
C20 C21 C22 H15 116.0 245.6
H14 C21 C22 H15 232.1 131.3
N19 C20 C21 H12 116.2 245.7
N19 C20 C21 H13 243.7 114.4
C22 C21 C20 H14 116.1 245.6
C22 C21 C20 H15 243.9 114.5
H12 C20 C21 H13 127.5 228.7
H14 C21 C20 H15 127.8 228.9
C11 C10 H1 H2 119.3 240.0
H1 C10 N08 C07 165.4 295.3
N08 C10 H1 H2 240.7 120.0
H1 C10 N08 H22 345.4 115.2
C11 C10 H2 H1 240.7 119.9
H2 C10 N08 C07 45.9 55.3
N08 C10 H2 H1 119.4 240.0
H2 C10 N08 H22 225.8 235.2
C11 C13 H4 H5 120.0 120.0
C11 C13 H4 H6 240.0 240.0
H4 C13 C11 H23 297.6 60.0
H5 C13 H4 H6 120.0 120.0
C11 C13 H5 H4 240.0 240.0
C11 C13 H5 H6 120.0 120.0
H5 C13 C11 H23 57.6 180.0
H4 C13 H5 H6 240.0 240.0
C11 C13 H6 H4 120.0 120.0
C11 C13 H6 H5 240.0 240.0
H6 C13 C11 H23 177.6 300.0
H4 C13 H6 H5 120.0 120.0
H7 C15 N12 C11 317.2 191.7
C16 C15 H7 H8 242.4 240.0
H7 C15 C16 H26 59.2 182.9
H7 C15 C16 H27 179.2 302.9
H7 C15 C16 H28 299.2 62.9
H8 C15 N12 C11 75.6 311.7
C16 C15 H8 H7 117.6 120.0
H8 C15 C16 H26 300.8 62.9
H8 C15 C16 H27 60.8 182.9
H8 C15 C16 H28 180.7 302.9
C14 C17 H9 H10 120.0 120.0
C14 C17 H9 H11 240.0 240.1
H10 C17 H9 H11 120.0 120.1
C14 C17 H10 H9 240.0 240.0
C14 C17 H10 H11 120.0 120.0
H9 C17 H10 H11 240.0 240.0
C14 C17 H11 H9 120.0 119.9
C14 C17 H11 H10 240.0 240.0
H9 C17 H11 H10 120.0 120.0
N19 C20 H12 H13 130.0 228.2
C21 C20 H12 H13 230.1 131.7
H12 C20 C21 H14 121.8 252.4
H12 C20 C21 H15 354.0 23.5
N19 C20 H13 H12 230.0 131.7
C21 C20 H13 H12 130.0 228.3
H13 C20 C21 H14 354.3 23.7
H13 C20 C21 H15 226.5 154.8
C22 C21 H14 H15 130.5 228.3
H14 C21 C20 H12 121.8 252.4
H14 C21 C20 H13 354.3 23.7
C20 C21 H14 H15 229.6 131.5
C22 C21 H15 H14 229.5 131.7
H15 C21 C20 H12 354.0 23.5
H15 C21 C20 H13 226.5 154.8
C20 C21 H15 H14 130.4 228.5
H16 C22 C21 H14 235.5 336.2
H16 C22 C21 H15 3.4 205.0
H17 C26 N25 C23 180.0 180.0
N25 C26 H17 H18 120.0 119.9
N25 C26 H17 H19 240.0 240.0
H17 C26 N25 H29 360.0 0.1
H18 C26 H17 H19 120.0 120.1
H18 C26 N25 C23 300.0 299.9
N25 C26 H18 H17 240.0 240.1
N25 C26 H18 H19 120.0 120.0
H18 C26 N25 H29 120.0 120.0
H17 C26 H18 H19 240.0 240.0
H19 C26 N25 C23 60.0 60.0
N25 C26 H19 H17 120.0 120.0
N25 C26 H19 H18 240.0 240.0
H19 C26 N25 H29 240.0 240.1
H17 C26 H19 H18 120.0 120.0
C02 C01 H20 C06 180.0 180.4
H20 C01 C06 C18 0.2 0.1
H20 C01 C06 N05 179.9 180.3
C02 C03 H21 C04 180.0 180.1
H21 C03 C04 N05 179.9 180.0
H21 C03 C04 N19 0.2 0.1
C10 N08 H22 C07 180.0 180.1
H22 N08 C10 H1 345.4 115.2
H22 N08 C10 H2 225.8 235.2
N12 C11 H23 C13 118.8 120.0
H23 C11 C13 H4 297.6 60.0
H23 C11 C13 H5 57.6 180.0
H23 C11 C13 H6 177.6 300.0
H23 C11 C10 H1 66.7 174.2
H23 C11 C10 H2 186.3 54.2
H24 C14 C17 H9 300.1 184.0
H24 C14 C17 H10 60.1 304.0
H24 C14 C17 H11 180.1 64.0
H25 C14 C17 H9 59.9 64.0
H25 C14 C17 H10 179.8 184.0
H25 C14 C17 H11 299.9 304.0
H26 C16 C15 H7 59.2 182.9
H26 C16 C15 H8 300.8 62.9
C15 C16 H26 H27 120.0 120.0
C15 C16 H26 H28 240.0 239.9
H27 C16 H26 H28 120.0 119.9
H27 C16 C15 H7 179.2 302.9
H27 C16 C15 H8 60.8 182.9
C15 C16 H27 H26 240.0 240.0
C15 C16 H27 H28 120.0 120.0
H26 C16 H27 H28 240.0 240.0
H28 C16 C15 H7 299.2 62.9
H28 C16 C15 H8 180.7 302.9
C15 C16 H28 H26 120.0 120.0
C15 C16 H28 H27 240.0 240.0
H26 C16 H28 H27 120.0 120.0
C26 N25 H29 C23 180.0 179.9
H29 N25 C26 H17 360.0 0.1
H29 N25 C26 H18 120.0 120.0
H29 N25 C26 H19 240.0 240.1
H32 C32 C31 H31 0.2 0.0
H34 C37 C38 S39 180.1 180.1
H34 C37 C38 H35 0.1 0.3
H34 C37 C36 H33 359.8 359.8
C37 C38 H35 S39 180.0 179.7
H35 C38 C37 H34 0.1 0.3