PDB Chemical Component 9DT
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9DT
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O |
C |
1.227 |
1.208 |
| C |
CA |
1.571 |
1.508 |
| N |
CA |
1.485 |
1.469 |
| CA |
C39 |
1.552 |
1.530 |
| CA |
C40 |
1.562 |
1.530 |
| C43 |
C42 |
1.394 |
1.383 |
| C43 |
C44 |
1.393 |
1.383 |
| C42 |
C41 |
1.400 |
1.382 |
| C44 |
C45 |
1.392 |
1.382 |
| C41 |
C40 |
1.533 |
1.507 |
| C41 |
C46 |
1.402 |
1.384 |
| C45 |
C46 |
1.391 |
1.385 |
| C46 |
F47 |
1.351 |
1.351 |
| C39 |
H1 |
1.100 |
1.090 |
| C39 |
H3 |
1.100 |
1.089 |
| C39 |
H4 |
1.100 |
1.090 |
| C40 |
H5 |
1.100 |
1.090 |
| C40 |
H6 |
1.100 |
1.090 |
| C42 |
H7 |
1.080 |
1.080 |
| C43 |
H8 |
1.080 |
1.079 |
| C44 |
H9 |
1.080 |
1.079 |
| C45 |
H10 |
1.080 |
1.080 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| C |
OXT |
1.347 |
1.342 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for 9DT
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
OXT |
121.3 |
120.0 |
| C |
CA |
C39 |
111.5 |
109.5 |
| C |
CA |
C40 |
110.8 |
109.4 |
| CA |
C |
OXT |
118.6 |
120.0 |
| C39 |
CA |
C40 |
107.7 |
109.5 |
| CA |
C39 |
H1 |
109.5 |
109.5 |
| CA |
C39 |
H3 |
109.5 |
109.5 |
| CA |
C39 |
H4 |
109.5 |
109.5 |
| CA |
C40 |
H5 |
108.2 |
109.5 |
| CA |
C40 |
H6 |
108.2 |
109.5 |
| C43 |
C42 |
H7 |
120.0 |
120.0 |
| C43 |
C44 |
C45 |
119.9 |
120.0 |
| C44 |
C43 |
H8 |
119.7 |
120.0 |
| C43 |
C44 |
H9 |
120.1 |
120.0 |
| C42 |
C41 |
C46 |
119.1 |
120.0 |
| C44 |
C45 |
C46 |
119.9 |
120.0 |
| C45 |
C44 |
H9 |
120.0 |
120.0 |
| C44 |
C45 |
H10 |
120.1 |
120.0 |
| C41 |
C40 |
H5 |
108.2 |
109.5 |
| C41 |
C40 |
H6 |
108.2 |
109.5 |
| C41 |
C46 |
C45 |
120.7 |
119.9 |
| C41 |
C46 |
F47 |
120.5 |
120.0 |
| C45 |
C46 |
F47 |
118.8 |
120.0 |
| C46 |
C45 |
H10 |
120.1 |
120.0 |
| H1 |
C39 |
H3 |
109.4 |
109.5 |
| H1 |
C39 |
H4 |
109.5 |
109.5 |
| H3 |
C39 |
H4 |
109.5 |
109.4 |
| H5 |
C40 |
H6 |
109.5 |
109.5 |
| H |
N |
H2 |
109.5 |
110.9 |
| C |
OXT |
HXT |
109.5 |
117.0 |
Torsion Angles for 9DT
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
C |
O |
OXT |
179.7 |
179.7 |
| O |
C |
OXT |
HXT |
0.0 |
359.7 |
| O |
C |
CA |
OXT |
180.3 |
180.3 |
| C39 |
CA |
C |
C40 |
119.9 |
120.0 |
| C |
CA |
C39 |
H1 |
180.0 |
60.0 |
| C |
CA |
C39 |
H3 |
300.0 |
180.0 |
| C |
CA |
C39 |
H4 |
60.0 |
300.0 |
| C |
CA |
C40 |
H5 |
139.3 |
305.0 |
| C |
CA |
C40 |
H6 |
257.8 |
65.0 |
| CA |
C |
OXT |
HXT |
180.3 |
180.0 |
| N |
CA |
C |
OXT |
322.8 |
35.0 |
| N |
CA |
C39 |
H1 |
59.5 |
300.0 |
| N |
CA |
C39 |
H3 |
179.5 |
60.0 |
| N |
CA |
C39 |
H4 |
299.5 |
180.0 |
| N |
CA |
C40 |
H5 |
259.8 |
65.0 |
| N |
CA |
C40 |
H6 |
18.3 |
185.0 |
| C |
CA |
C39 |
C40 |
238.3 |
240.0 |
| C39 |
CA |
C |
OXT |
202.9 |
275.0 |
| C39 |
CA |
C40 |
H5 |
17.2 |
185.0 |
| C39 |
CA |
C40 |
H6 |
135.7 |
305.0 |
| H1 |
C39 |
CA |
H3 |
240.0 |
240.0 |
| H1 |
C39 |
CA |
H4 |
120.0 |
120.0 |
| H3 |
C39 |
CA |
H4 |
240.0 |
240.0 |
| C |
CA |
C40 |
C39 |
122.1 |
120.0 |
| C40 |
CA |
C |
OXT |
83.0 |
155.0 |
| C40 |
CA |
C39 |
H1 |
301.7 |
180.0 |
| C40 |
CA |
C39 |
H3 |
61.7 |
300.0 |
| C40 |
CA |
C39 |
H4 |
181.7 |
60.0 |
| C41 |
C40 |
CA |
H5 |
239.2 |
240.0 |
| C41 |
C40 |
CA |
H6 |
120.7 |
120.0 |
| H5 |
C40 |
CA |
H6 |
241.5 |
240.0 |
| C43 |
C42 |
C41 |
C46 |
0.3 |
0.2 |
| C44 |
C43 |
C42 |
H7 |
180.0 |
180.0 |
| C43 |
C44 |
C45 |
C46 |
0.1 |
359.8 |
| C45 |
C44 |
C43 |
H9 |
180.0 |
180.0 |
| C43 |
C44 |
C45 |
H10 |
180.1 |
180.0 |
| C42 |
C41 |
C40 |
H5 |
143.1 |
145.3 |
| C42 |
C41 |
C40 |
H6 |
24.6 |
25.2 |
| C42 |
C41 |
C46 |
C45 |
359.7 |
359.5 |
| C42 |
C41 |
C46 |
F47 |
179.8 |
179.8 |
| C45 |
C44 |
C43 |
H8 |
179.9 |
180.0 |
| C43 |
C44 |
C45 |
H9 |
180.0 |
180.0 |
| C41 |
C46 |
C45 |
C44 |
0.1 |
0.5 |
| C44 |
C45 |
C46 |
F47 |
180.0 |
180.2 |
| C46 |
C45 |
C44 |
H10 |
180.0 |
179.8 |
| CA |
C40 |
C41 |
H5 |
120.7 |
120.0 |
| CA |
C40 |
C41 |
H6 |
239.3 |
240.0 |
| H5 |
C40 |
C41 |
H6 |
118.6 |
120.0 |
| C44 |
C45 |
C46 |
C41 |
0.1 |
0.5 |
| C46 |
C41 |
C40 |
H5 |
322.5 |
325.0 |
| C46 |
C41 |
C40 |
H6 |
204.0 |
205.0 |
| C45 |
C46 |
C41 |
F47 |
179.9 |
179.7 |
| C41 |
C46 |
C45 |
H10 |
180.1 |
180.3 |
| C46 |
C45 |
C44 |
H9 |
180.1 |
179.8 |
| C44 |
C45 |
C46 |
H10 |
180.0 |
180.2 |
| C41 |
C46 |
C45 |
F47 |
180.1 |
180.3 |
| C41 |
C46 |
F47 |
C45 |
179.9 |
179.7 |
| F47 |
C46 |
C45 |
H10 |
360.0 |
360.0 |
| H1 |
C39 |
CA |
C40 |
301.7 |
180.0 |
| CA |
C39 |
H1 |
H3 |
120.0 |
120.1 |
| CA |
C39 |
H1 |
H4 |
240.0 |
240.0 |
| H3 |
C39 |
H1 |
H4 |
120.0 |
120.0 |
| H3 |
C39 |
CA |
C40 |
61.7 |
300.0 |
| CA |
C39 |
H3 |
H1 |
240.0 |
240.0 |
| CA |
C39 |
H3 |
H4 |
120.0 |
120.0 |
| H1 |
C39 |
H3 |
H4 |
240.0 |
240.0 |
| H4 |
C39 |
CA |
C40 |
181.7 |
60.0 |
| CA |
C39 |
H4 |
H1 |
120.0 |
120.0 |
| CA |
C39 |
H4 |
H3 |
240.0 |
239.9 |
| H1 |
C39 |
H4 |
H3 |
119.9 |
120.0 |
| CA |
C40 |
H5 |
H6 |
117.7 |
120.0 |
| C41 |
C40 |
H5 |
H6 |
242.2 |
240.0 |
| CA |
C40 |
H6 |
H5 |
242.3 |
240.0 |
| C41 |
C40 |
H6 |
H5 |
117.8 |
120.0 |
| H7 |
C42 |
C41 |
C46 |
180.2 |
180.3 |
| H8 |
C43 |
C42 |
H7 |
360.0 |
360.0 |
| H8 |
C43 |
C44 |
C45 |
179.9 |
180.0 |
| H8 |
C43 |
C44 |
H9 |
359.9 |
360.0 |
| C43 |
C44 |
H9 |
C45 |
180.0 |
180.0 |
| H9 |
C44 |
C43 |
H8 |
359.9 |
360.0 |
| H9 |
C44 |
C45 |
C46 |
180.1 |
179.8 |
| H9 |
C44 |
C45 |
H10 |
0.1 |
360.0 |
| C44 |
C45 |
H10 |
C46 |
180.0 |
179.8 |
| H10 |
C45 |
C44 |
H9 |
0.1 |
360.0 |
| H10 |
C45 |
C46 |
F47 |
360.0 |
360.0 |
| OXT |
C |
CA |
C39 |
202.9 |
275.0 |
| OXT |
C |
CA |
C40 |
83.0 |
155.0 |