PDB Chemical Component 9DQ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9DQ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O |
C |
1.226 |
1.208 |
| C |
CA |
1.538 |
1.508 |
| CA |
C60 |
1.558 |
1.530 |
| CA |
N |
1.473 |
1.469 |
| C60 |
C61 |
1.508 |
1.506 |
| C61 |
N65 |
1.307 |
1.311 |
| C61 |
N62 |
1.365 |
1.346 |
| N65 |
N64 |
1.388 |
1.288 |
| N62 |
N63 |
1.331 |
1.290 |
| N64 |
N63 |
1.382 |
1.287 |
| CA |
HA |
1.100 |
1.090 |
| C60 |
H3 |
1.100 |
1.090 |
| C60 |
H4 |
1.100 |
1.090 |
| N62 |
H5 |
1.000 |
0.970 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| C |
OXT |
1.340 |
1.343 |
| OXT |
HXT |
0.950 |
0.968 |
Bond Angles for 9DQ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
OXT |
123.3 |
120.0 |
| C |
CA |
C60 |
109.5 |
109.5 |
| C |
CA |
N |
110.0 |
109.4 |
| C |
CA |
HA |
105.3 |
109.5 |
| CA |
C |
OXT |
118.3 |
119.9 |
| C60 |
CA |
N |
119.8 |
109.5 |
| CA |
C60 |
C61 |
115.0 |
109.4 |
| C60 |
CA |
HA |
105.2 |
109.5 |
| CA |
C60 |
H3 |
108.1 |
109.5 |
| CA |
C60 |
H4 |
108.1 |
109.4 |
| N |
CA |
HA |
106.0 |
109.5 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| C60 |
C61 |
N65 |
126.5 |
126.7 |
| C60 |
C61 |
N62 |
123.6 |
126.7 |
| C61 |
C60 |
H3 |
108.1 |
109.5 |
| C61 |
C60 |
H4 |
108.1 |
109.5 |
| N62 |
C61 |
N65 |
109.9 |
106.6 |
| C61 |
N65 |
N64 |
105.4 |
108.0 |
| C61 |
N62 |
N63 |
110.3 |
107.2 |
| C61 |
N62 |
H5 |
124.8 |
126.4 |
| N63 |
N62 |
H5 |
124.8 |
126.5 |
| H3 |
C60 |
H4 |
109.5 |
109.5 |
| H |
N |
H2 |
109.5 |
110.9 |
| C |
OXT |
HXT |
109.5 |
116.9 |
Torsion Angles for 9DQ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
CA |
HA |
0.1 |
220.3 |
| CA |
C |
O |
OXT |
180.1 |
179.7 |
| O |
C |
OXT |
HXT |
0.0 |
359.8 |
| O |
C |
CA |
OXT |
179.9 |
180.3 |
| C60 |
CA |
C |
N |
133.5 |
120.0 |
| C |
CA |
C60 |
C61 |
198.3 |
175.0 |
| C60 |
CA |
C |
HA |
247.4 |
240.0 |
| C |
CA |
C60 |
H3 |
319.2 |
295.0 |
| C |
CA |
C60 |
H4 |
77.5 |
55.0 |
| N |
CA |
C |
HA |
113.9 |
120.0 |
| C |
CA |
N |
H |
180.0 |
60.0 |
| C |
CA |
N |
H2 |
300.0 |
183.9 |
| CA |
C |
OXT |
HXT |
179.9 |
180.1 |
| C |
CA |
C60 |
N |
231.7 |
240.0 |
| C |
CA |
C60 |
HA |
112.7 |
120.0 |
| C60 |
CA |
C |
OXT |
67.6 |
280.0 |
| N |
CA |
C60 |
HA |
241.0 |
240.0 |
| C60 |
CA |
N |
H |
51.9 |
300.1 |
| C60 |
CA |
N |
H2 |
172.0 |
63.9 |
| CA |
C60 |
C61 |
N65 |
149.6 |
305.0 |
| CA |
C60 |
C61 |
N62 |
329.3 |
125.3 |
| C61 |
C60 |
CA |
H3 |
239.2 |
240.0 |
| C61 |
C60 |
CA |
H4 |
120.8 |
120.0 |
| H3 |
C60 |
CA |
H4 |
241.7 |
240.0 |
| C |
CA |
N |
C60 |
128.0 |
120.0 |
| C |
CA |
N |
HA |
246.6 |
240.0 |
| N |
CA |
C |
OXT |
294.0 |
160.0 |
| N |
CA |
C60 |
C61 |
326.6 |
295.0 |
| C60 |
CA |
N |
HA |
118.6 |
120.0 |
| N |
CA |
C60 |
H3 |
87.4 |
55.0 |
| N |
CA |
C60 |
H4 |
205.8 |
175.0 |
| H |
N |
CA |
H2 |
240.0 |
236.1 |
| C61 |
C60 |
CA |
N |
326.6 |
295.0 |
| C61 |
C60 |
CA |
HA |
85.6 |
55.0 |
| CA |
C60 |
C61 |
H3 |
120.8 |
120.0 |
| CA |
C60 |
C61 |
H4 |
239.2 |
240.0 |
| N62 |
C61 |
C60 |
N65 |
179.7 |
180.4 |
| C60 |
C61 |
N65 |
N64 |
179.8 |
179.9 |
| C60 |
C61 |
N62 |
N63 |
180.1 |
179.9 |
| C60 |
C61 |
N62 |
H5 |
0.2 |
359.9 |
| H3 |
C60 |
C61 |
H4 |
118.4 |
120.0 |
| C60 |
C61 |
N65 |
N62 |
179.7 |
180.3 |
| N65 |
C61 |
C60 |
H3 |
28.8 |
184.9 |
| N65 |
C61 |
C60 |
H4 |
270.4 |
64.9 |
| N65 |
C61 |
N62 |
N63 |
359.9 |
0.2 |
| N65 |
C61 |
N62 |
H5 |
179.9 |
180.2 |
| C60 |
C61 |
N62 |
N65 |
180.3 |
179.7 |
| N62 |
C61 |
C60 |
H3 |
208.5 |
5.3 |
| N62 |
C61 |
C60 |
H4 |
90.1 |
245.3 |
| N62 |
C61 |
N65 |
N64 |
0.1 |
359.6 |
| N63 |
N62 |
C61 |
H5 |
180.0 |
180.1 |
| N63 |
N62 |
C61 |
N65 |
359.9 |
0.2 |
| C61 |
N62 |
N63 |
H5 |
180.0 |
179.9 |
| C61 |
N65 |
N64 |
N63 |
360.0 |
0.4 |
| N64 |
N63 |
N62 |
H5 |
180.1 |
180.0 |
| C |
CA |
HA |
C60 |
244.4 |
240.0 |
| C |
CA |
HA |
N |
116.6 |
120.0 |
| HA |
CA |
C |
OXT |
180.2 |
40.0 |
| C60 |
CA |
HA |
N |
232.2 |
239.9 |
| HA |
CA |
C60 |
C61 |
85.6 |
55.0 |
| HA |
CA |
C60 |
H3 |
206.4 |
175.0 |
| HA |
CA |
C60 |
H4 |
324.8 |
295.0 |
| HA |
CA |
N |
H |
293.4 |
180.0 |
| HA |
CA |
N |
H2 |
53.4 |
303.9 |
| H3 |
C60 |
CA |
N |
87.4 |
55.0 |
| CA |
C60 |
H3 |
C61 |
235.0 |
240.0 |
| H3 |
C60 |
CA |
HA |
206.4 |
175.0 |
| CA |
C60 |
H3 |
H4 |
117.5 |
120.0 |
| H3 |
C60 |
C61 |
N65 |
28.8 |
184.9 |
| H3 |
C60 |
C61 |
N62 |
208.5 |
5.3 |
| C61 |
C60 |
H3 |
H4 |
242.5 |
239.9 |
| H4 |
C60 |
CA |
N |
205.8 |
175.0 |
| CA |
C60 |
H4 |
C61 |
125.0 |
120.0 |
| H4 |
C60 |
CA |
HA |
324.8 |
295.0 |
| CA |
C60 |
H4 |
H3 |
242.5 |
240.0 |
| H4 |
C60 |
C61 |
N65 |
270.4 |
64.9 |
| H4 |
C60 |
C61 |
N62 |
90.1 |
245.3 |
| C61 |
C60 |
H4 |
H3 |
117.5 |
120.1 |
| H5 |
N62 |
C61 |
N65 |
179.9 |
180.2 |
| C61 |
N62 |
H5 |
N63 |
180.0 |
180.1 |
| H |
N |
CA |
HA |
293.4 |
180.0 |
| CA |
N |
H |
H2 |
120.0 |
123.9 |
| H2 |
N |
CA |
HA |
53.4 |
303.9 |
| CA |
N |
H2 |
H |
239.9 |
236.1 |
| OXT |
C |
CA |
C60 |
67.6 |
280.0 |
| OXT |
C |
CA |
N |
294.0 |
160.0 |
| OXT |
C |
CA |
HA |
180.2 |
40.0 |