PDB Chemical Component 9DP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9DP
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C3 |
C1 |
1.391 |
1.383 |
| C1 |
CL1 |
1.821 |
1.736 |
| C1 |
C2 |
1.390 |
1.384 |
| C6 |
N1 |
1.371 |
1.400 |
| N1 |
C7 |
1.345 |
1.348 |
| N1 |
HN1 |
1.000 |
0.970 |
| C7 |
O1 |
1.232 |
1.217 |
| C6 |
C2 |
1.393 |
1.389 |
| C2 |
CL2 |
1.752 |
1.736 |
| C7 |
N2 |
1.337 |
1.348 |
| N2 |
C8 |
1.341 |
1.395 |
| N2 |
HN2 |
1.000 |
0.970 |
| O2 |
C24 |
1.246 |
1.343 |
| O2 |
HO2 |
0.950 |
0.967 |
| C4 |
C3 |
1.406 |
1.383 |
| C3 |
H3 |
1.080 |
1.080 |
| N4 |
N3 |
1.402 |
1.401 |
| N3 |
C10 |
1.356 |
1.308 |
| O3 |
C24 |
1.260 |
1.208 |
| C4 |
C5 |
1.398 |
1.381 |
| C4 |
H4 |
1.080 |
1.080 |
| C16 |
N4 |
1.335 |
1.402 |
| C8 |
N4 |
1.343 |
1.361 |
| C5 |
C6 |
1.394 |
1.388 |
| C5 |
H5 |
1.080 |
1.080 |
| C22 |
N5 |
1.452 |
1.472 |
| N5 |
C21 |
1.447 |
1.466 |
| N5 |
HN5 |
1.000 |
1.009 |
| C8 |
C9 |
1.399 |
1.361 |
| C9 |
C10 |
1.400 |
1.397 |
| C9 |
H9 |
1.080 |
1.081 |
| C10 |
C11 |
1.515 |
1.507 |
| C13 |
C11 |
1.525 |
1.530 |
| C11 |
C14 |
1.516 |
1.530 |
| C11 |
C12 |
1.525 |
1.531 |
| C12 |
H12 |
1.100 |
1.089 |
| C12 |
H12A |
1.100 |
1.091 |
| C12 |
H12B |
1.100 |
1.090 |
| C13 |
H13 |
1.100 |
1.090 |
| C13 |
H13A |
1.100 |
1.091 |
| C13 |
H13B |
1.100 |
1.090 |
| C14 |
H14 |
1.100 |
1.090 |
| C14 |
H14A |
1.100 |
1.090 |
| C14 |
H14B |
1.100 |
1.090 |
| C18 |
C15 |
1.375 |
1.379 |
| C16 |
C15 |
1.394 |
1.389 |
| C15 |
H15 |
1.080 |
1.079 |
| C17 |
C16 |
1.401 |
1.386 |
| C20 |
C17 |
1.386 |
1.386 |
| C17 |
H17 |
1.080 |
1.080 |
| C19 |
C18 |
1.378 |
1.387 |
| C18 |
H18 |
1.080 |
1.080 |
| C20 |
C19 |
1.381 |
1.379 |
| C21 |
C19 |
1.504 |
1.507 |
| C23 |
C20 |
1.519 |
1.507 |
| C21 |
H21 |
1.100 |
1.090 |
| C21 |
H21A |
1.100 |
1.090 |
| C24 |
C22 |
1.515 |
1.507 |
| C22 |
C23 |
1.527 |
1.529 |
| C22 |
H22 |
1.100 |
1.090 |
| C23 |
H23 |
1.100 |
1.089 |
| C23 |
H23A |
1.100 |
1.090 |
Bond Angles for 9DP
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CL1 |
C1 |
C2 |
122.5 |
119.9 |
| C1 |
C2 |
CL2 |
119.6 |
120.1 |
| C6 |
N1 |
C7 |
125.5 |
120.0 |
| C6 |
N1 |
HN1 |
117.3 |
120.0 |
| C7 |
N1 |
HN1 |
117.2 |
120.0 |
| N1 |
C7 |
O1 |
121.5 |
120.0 |
| N1 |
C7 |
N2 |
117.7 |
120.0 |
| C7 |
N2 |
C8 |
120.7 |
120.0 |
| C7 |
N2 |
HN2 |
119.7 |
120.0 |
| C8 |
N2 |
HN2 |
119.7 |
120.0 |
| N2 |
C8 |
N4 |
119.5 |
126.2 |
| N2 |
C8 |
C9 |
133.3 |
126.3 |
| C24 |
O2 |
HO2 |
109.5 |
117.0 |
| O2 |
C24 |
O3 |
121.5 |
120.0 |
| O2 |
C24 |
C22 |
114.9 |
120.0 |
| C4 |
C3 |
H3 |
120.2 |
119.9 |
| N4 |
N3 |
C10 |
101.5 |
108.5 |
| N3 |
C10 |
C9 |
113.9 |
108.5 |
| N3 |
C10 |
C11 |
123.1 |
125.8 |
| O3 |
C24 |
C22 |
123.6 |
120.0 |
| C5 |
C4 |
H4 |
118.8 |
119.9 |
| C4 |
C5 |
C6 |
118.7 |
120.0 |
| C4 |
C5 |
H5 |
120.7 |
120.0 |
| C6 |
C5 |
H5 |
120.6 |
120.0 |
| C22 |
N5 |
HN5 |
104.8 |
111.0 |
| C21 |
N5 |
HN5 |
104.9 |
111.0 |
| N5 |
C21 |
C19 |
107.6 |
110.5 |
| N5 |
C21 |
H21 |
110.1 |
109.3 |
| N5 |
C21 |
H21A |
110.1 |
109.3 |
| C8 |
C9 |
C10 |
104.1 |
107.9 |
| C8 |
C9 |
H9 |
127.9 |
126.1 |
| C10 |
C9 |
H9 |
127.9 |
126.0 |
| C9 |
C10 |
C11 |
123.0 |
125.8 |
| C10 |
C11 |
C14 |
111.9 |
109.5 |
| C10 |
C11 |
C12 |
109.9 |
109.4 |
| C13 |
C11 |
C14 |
106.5 |
109.5 |
| C12 |
C11 |
C14 |
108.7 |
109.5 |
| C11 |
C14 |
H14 |
109.5 |
109.5 |
| C11 |
C14 |
H14A |
109.4 |
109.5 |
| C11 |
C14 |
H14B |
109.5 |
109.4 |
| C11 |
C12 |
H12 |
109.5 |
109.5 |
| C11 |
C12 |
H12A |
109.4 |
109.4 |
| C11 |
C12 |
H12B |
109.4 |
109.5 |
| H12 |
C12 |
H12A |
109.5 |
109.5 |
| H12 |
C12 |
H12B |
109.5 |
109.5 |
| H12A |
C12 |
H12B |
109.5 |
109.4 |
| H13 |
C13 |
H13A |
109.5 |
109.5 |
| H13 |
C13 |
H13B |
109.5 |
109.5 |
| H13A |
C13 |
H13B |
109.5 |
109.4 |
| H14 |
C14 |
H14A |
109.5 |
109.5 |
| H14 |
C14 |
H14B |
109.4 |
109.5 |
| H14A |
C14 |
H14B |
109.5 |
109.5 |
| C18 |
C15 |
H15 |
119.0 |
120.1 |
| C16 |
C15 |
H15 |
119.0 |
120.1 |
| C20 |
C17 |
H17 |
118.3 |
119.9 |
| C19 |
C18 |
H18 |
119.8 |
119.8 |
| H21 |
C21 |
H21A |
108.8 |
109.2 |
| C24 |
C22 |
H22 |
108.7 |
109.8 |
| C23 |
C22 |
H22 |
106.9 |
109.6 |
| C22 |
C23 |
H23 |
108.3 |
109.4 |
| C22 |
C23 |
H23A |
108.3 |
109.4 |
| H23 |
C23 |
H23A |
110.6 |
109.3 |
Torsion Angles for 9DP
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CL1 |
C1 |
C2 |
CL2 |
358.5 |
0.1 |
| C7 |
N1 |
C6 |
HN1 |
180.0 |
180.0 |
| C6 |
N1 |
C7 |
O1 |
356.4 |
355.6 |
| C6 |
N1 |
C7 |
N2 |
178.3 |
175.5 |
| C6 |
N1 |
C7 |
HN1 |
180.0 |
180.0 |
| N1 |
C7 |
N2 |
C8 |
180.5 |
180.0 |
| N1 |
C7 |
N2 |
HN2 |
0.6 |
0.1 |
| C6 |
N1 |
HN1 |
C7 |
180.0 |
180.0 |
| HN1 |
N1 |
C7 |
O1 |
176.4 |
175.6 |
| HN1 |
N1 |
C7 |
N2 |
358.3 |
355.5 |
| O1 |
C7 |
N1 |
HN1 |
176.4 |
175.6 |
| N1 |
C7 |
O1 |
N2 |
182.0 |
179.9 |
| C2 |
C6 |
N1 |
C7 |
218.9 |
215.0 |
| C2 |
C6 |
N1 |
HN1 |
38.9 |
34.9 |
| N2 |
C7 |
N1 |
HN1 |
358.3 |
355.5 |
| N1 |
C7 |
N2 |
O1 |
178.1 |
180.1 |
| C8 |
N2 |
C7 |
HN2 |
180.0 |
179.9 |
| C7 |
N2 |
C8 |
N4 |
196.9 |
180.1 |
| C7 |
N2 |
C8 |
C9 |
21.9 |
360.0 |
| C7 |
N2 |
C8 |
HN2 |
180.0 |
180.1 |
| N2 |
C8 |
C9 |
C10 |
177.1 |
180.0 |
| N2 |
C8 |
C9 |
H9 |
357.1 |
0.1 |
| C7 |
N2 |
HN2 |
C8 |
180.0 |
179.9 |
| HN2 |
N2 |
C8 |
N4 |
16.9 |
0.0 |
| HN2 |
N2 |
C8 |
C9 |
201.9 |
179.9 |
| O3 |
C24 |
O2 |
C22 |
179.9 |
180.0 |
| O2 |
C24 |
C22 |
H22 |
232.0 |
39.5 |
| HO2 |
O2 |
C24 |
O3 |
0.0 |
0.0 |
| HO2 |
O2 |
C24 |
C22 |
180.1 |
180.1 |
| N2 |
C8 |
N4 |
N3 |
181.9 |
180.0 |
| N4 |
N3 |
C10 |
C9 |
359.8 |
360.0 |
| N4 |
N3 |
C10 |
C11 |
180.5 |
180.0 |
| C8 |
C9 |
C10 |
N3 |
359.1 |
0.0 |
| N3 |
C10 |
C9 |
H9 |
179.1 |
180.0 |
| C9 |
C10 |
N3 |
C11 |
179.3 |
180.0 |
| N3 |
C10 |
C11 |
C14 |
7.2 |
255.0 |
| N3 |
C10 |
C11 |
C12 |
246.4 |
15.0 |
| O3 |
C24 |
O2 |
HO2 |
0.0 |
0.0 |
| O2 |
C24 |
O3 |
C22 |
180.1 |
180.0 |
| O3 |
C24 |
C22 |
H22 |
52.0 |
219.5 |
| C5 |
C4 |
C3 |
H3 |
179.9 |
180.0 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
180.3 |
| H4 |
C4 |
C3 |
H3 |
359.9 |
0.0 |
| H4 |
C4 |
C5 |
C6 |
180.2 |
180.3 |
| H4 |
C4 |
C5 |
H5 |
0.2 |
360.0 |
| N4 |
C8 |
N2 |
HN2 |
16.9 |
0.0 |
| N2 |
C8 |
N4 |
C9 |
183.8 |
179.9 |
| C8 |
N4 |
N3 |
C10 |
1.3 |
360.0 |
| C5 |
C6 |
N1 |
C7 |
37.6 |
34.7 |
| C5 |
C6 |
N1 |
HN1 |
217.6 |
214.6 |
| C6 |
C5 |
C4 |
H4 |
180.2 |
180.3 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
179.7 |
| H5 |
C5 |
C4 |
H4 |
0.2 |
360.0 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
180.3 |
| O2 |
C24 |
C22 |
N5 |
353.7 |
160.0 |
| O3 |
C24 |
C22 |
N5 |
173.7 |
340.0 |
| C21 |
N5 |
C22 |
HN5 |
240.0 |
236.6 |
| C22 |
N5 |
C21 |
H21 |
74.8 |
67.7 |
| C22 |
N5 |
C21 |
H21A |
194.8 |
187.1 |
| C22 |
N5 |
C21 |
HN5 |
120.0 |
123.4 |
| H21 |
C21 |
N5 |
H21A |
240.0 |
240.6 |
| HN5 |
N5 |
C21 |
C19 |
194.8 |
184.0 |
| HN5 |
N5 |
C21 |
H21 |
314.8 |
304.3 |
| HN5 |
N5 |
C21 |
H21A |
74.8 |
63.7 |
| C9 |
C8 |
N2 |
HN2 |
201.9 |
179.9 |
| N2 |
C8 |
C9 |
N4 |
175.5 |
180.1 |
| N3 |
C10 |
C9 |
C8 |
359.1 |
0.0 |
| C10 |
C9 |
C8 |
H9 |
180.0 |
180.0 |
| C8 |
C9 |
C10 |
C11 |
178.4 |
180.1 |
| N3 |
C10 |
C9 |
C11 |
180.7 |
180.0 |
| C8 |
C9 |
C10 |
H9 |
180.0 |
180.0 |
| C9 |
C10 |
C11 |
C14 |
188.0 |
75.0 |
| C9 |
C10 |
C11 |
C12 |
67.2 |
195.0 |
| C8 |
C9 |
H9 |
C10 |
180.0 |
179.9 |
| H9 |
C9 |
C10 |
C11 |
358.4 |
0.0 |
| N3 |
C10 |
C11 |
C9 |
179.3 |
180.0 |
| C11 |
C10 |
C9 |
H9 |
358.4 |
0.0 |
| C13 |
C11 |
C10 |
C14 |
117.5 |
240.0 |
| C12 |
C11 |
C10 |
C14 |
239.2 |
120.0 |
| C10 |
C11 |
C14 |
H14 |
180.0 |
60.0 |
| C10 |
C11 |
C14 |
H14A |
300.0 |
180.0 |
| C10 |
C11 |
C14 |
H14B |
60.0 |
300.0 |
| C10 |
C11 |
C12 |
H12 |
180.0 |
60.0 |
| C10 |
C11 |
C12 |
H12A |
300.0 |
180.0 |
| C10 |
C11 |
C12 |
H12B |
60.0 |
299.9 |
| C10 |
C11 |
C13 |
C14 |
239.1 |
120.0 |
| C12 |
C11 |
C13 |
C14 |
118.0 |
240.0 |
| C13 |
C11 |
C14 |
H14 |
61.0 |
180.0 |
| C13 |
C11 |
C14 |
H14A |
181.0 |
300.0 |
| C13 |
C11 |
C14 |
H14B |
301.0 |
60.0 |
| C13 |
C11 |
C12 |
H12 |
300.6 |
300.0 |
| C13 |
C11 |
C12 |
H12A |
60.6 |
60.0 |
| C13 |
C11 |
C12 |
H12B |
180.6 |
180.0 |
| C10 |
C11 |
C14 |
C12 |
238.5 |
120.0 |
| C14 |
C11 |
C12 |
H12 |
57.3 |
180.0 |
| C14 |
C11 |
C12 |
H12A |
177.3 |
300.0 |
| C14 |
C11 |
C12 |
H12B |
297.3 |
59.9 |
| H14 |
C14 |
C11 |
H14A |
240.0 |
240.0 |
| H14 |
C14 |
C11 |
H14B |
120.0 |
120.0 |
| H14A |
C14 |
C11 |
H14B |
240.0 |
240.0 |
| C10 |
C11 |
C12 |
C14 |
122.7 |
240.0 |
| C13 |
C11 |
C12 |
C14 |
243.3 |
120.0 |
| C12 |
C11 |
C14 |
H14 |
301.5 |
300.0 |
| C12 |
C11 |
C14 |
H14A |
61.5 |
60.0 |
| C12 |
C11 |
C14 |
H14B |
181.5 |
180.0 |
| H12 |
C12 |
C11 |
H12A |
240.0 |
240.0 |
| H12 |
C12 |
C11 |
H12B |
120.0 |
120.1 |
| H12A |
C12 |
C11 |
H12B |
240.0 |
240.1 |
| H12 |
C12 |
C11 |
C14 |
57.3 |
180.0 |
| C11 |
C12 |
H12 |
H12A |
120.0 |
120.0 |
| C11 |
C12 |
H12 |
H12B |
240.0 |
239.9 |
| H12A |
C12 |
H12 |
H12B |
120.1 |
120.0 |
| H12A |
C12 |
C11 |
C14 |
177.3 |
300.0 |
| C11 |
C12 |
H12A |
H12 |
240.0 |
240.0 |
| C11 |
C12 |
H12A |
H12B |
120.0 |
120.0 |
| H12 |
C12 |
H12A |
H12B |
240.0 |
240.0 |
| H12B |
C12 |
C11 |
C14 |
297.3 |
59.9 |
| C11 |
C12 |
H12B |
H12 |
120.0 |
120.1 |
| C11 |
C12 |
H12B |
H12A |
240.0 |
240.1 |
| H12 |
C12 |
H12B |
H12A |
120.1 |
120.0 |
| H13 |
C13 |
C11 |
C14 |
300.9 |
300.0 |
| H13A |
C13 |
H13 |
H13B |
120.0 |
119.9 |
| H13A |
C13 |
C11 |
C14 |
60.9 |
60.0 |
| H13 |
C13 |
H13A |
H13B |
240.0 |
240.0 |
| H13B |
C13 |
C11 |
C14 |
180.9 |
179.9 |
| H13 |
C13 |
H13B |
H13A |
120.0 |
120.0 |
| C11 |
C14 |
H14 |
H14A |
120.0 |
120.1 |
| C11 |
C14 |
H14 |
H14B |
240.0 |
240.0 |
| H14A |
C14 |
H14 |
H14B |
120.0 |
120.0 |
| C11 |
C14 |
H14A |
H14 |
240.0 |
239.9 |
| C11 |
C14 |
H14A |
H14B |
120.0 |
120.0 |
| H14 |
C14 |
H14A |
H14B |
240.0 |
240.0 |
| C11 |
C14 |
H14B |
H14 |
120.0 |
120.0 |
| C11 |
C14 |
H14B |
H14A |
240.0 |
240.0 |
| H14 |
C14 |
H14B |
H14A |
120.0 |
120.0 |
| C16 |
C15 |
C18 |
H15 |
180.0 |
180.0 |
| C18 |
C15 |
C16 |
H15 |
180.0 |
180.0 |
| C17 |
C16 |
C15 |
H15 |
179.9 |
179.9 |
| N5 |
C21 |
C19 |
C18 |
194.2 |
197.4 |
| C19 |
C18 |
C15 |
H15 |
179.2 |
180.0 |
| H18 |
C18 |
C15 |
H15 |
359.2 |
359.9 |
| N5 |
C21 |
C19 |
C20 |
14.1 |
17.7 |
| C19 |
C20 |
C17 |
H17 |
180.1 |
180.3 |
| C20 |
C19 |
C18 |
H18 |
181.4 |
180.3 |
| C19 |
C21 |
N5 |
HN5 |
194.8 |
184.0 |
| N5 |
C21 |
C19 |
H21 |
120.0 |
120.3 |
| N5 |
C21 |
C19 |
H21A |
240.0 |
239.7 |
| C21 |
C19 |
C18 |
H18 |
1.3 |
0.5 |
| C23 |
C20 |
C17 |
H17 |
359.3 |
0.5 |
| H21 |
C21 |
N5 |
HN5 |
314.8 |
304.3 |
| N5 |
C21 |
H21 |
C19 |
241.5 |
239.0 |
| N5 |
C21 |
H21 |
H21A |
120.8 |
119.5 |
| H21A |
C21 |
N5 |
HN5 |
74.8 |
63.7 |
| N5 |
C21 |
H21A |
C19 |
118.5 |
121.0 |
| N5 |
C21 |
H21A |
H21 |
239.2 |
240.5 |
| C22 |
C24 |
O2 |
HO2 |
180.1 |
180.1 |
| O2 |
C24 |
C22 |
O3 |
179.9 |
180.0 |
| C24 |
C22 |
N5 |
HN5 |
298.4 |
314.4 |
| C23 |
C22 |
C24 |
H22 |
241.7 |
239.5 |
| C24 |
C22 |
C23 |
H23 |
88.3 |
69.7 |
| C24 |
C22 |
C23 |
H23A |
328.4 |
310.0 |
| O2 |
C24 |
C22 |
C23 |
113.6 |
279.0 |
| O3 |
C24 |
C22 |
C23 |
293.7 |
99.0 |
| C23 |
C22 |
N5 |
HN5 |
176.0 |
194.7 |
| C24 |
C22 |
C23 |
H22 |
119.4 |
120.6 |
| H23 |
C23 |
C22 |
H23A |
120.0 |
119.7 |
| H22 |
C22 |
N5 |
HN5 |
57.7 |
75.0 |
| H22 |
C22 |
C23 |
H23 |
329.0 |
309.1 |
| H22 |
C22 |
C23 |
H23A |
209.0 |
189.4 |
| H23 |
C23 |
C22 |
H22 |
329.0 |
309.1 |
| C22 |
C23 |
H23 |
H23A |
241.5 |
240.2 |
| H23A |
C23 |
C22 |
H22 |
209.0 |
189.4 |
| C22 |
C23 |
H23A |
H23 |
118.5 |
119.8 |