PDB Chemical Component 9DN

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 9DN

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
S1	O2	1.438	1.421
S1	O3	1.442	1.421
S1	C1	1.817	1.761
S1	N	1.636	1.656
OXT	C	1.298	1.342
N1	C10	1.475	1.393
N1	C11	1.473	1.469
N1	C12	1.493	1.469
C1	C2	1.378	1.361
C1	C6	1.485	1.405
C2	C3	1.414	1.394
C3	C4	1.370	1.361
C4	C5	1.430	1.404
C5	C6	1.485	1.417
C5	C10	1.470	1.411
C6	C7	1.426	1.406
C7	C8	1.401	1.362
C8	C9	1.461	1.391
C9	C10	1.444	1.378
N	CA	1.469	1.466
CA	C	1.539	1.507
CA	CB	1.546	1.529
C	O	1.220	1.208
CB	CG	1.520	1.507
CG	OD1	1.244	1.213
CG	ND2	1.343	1.348
N	H	1.000	0.970
OXT	HXT	0.950	0.968
C11	H111	1.100	1.090
C11	H112	1.100	1.090
C11	H113	1.100	1.090
C12	H121	1.100	1.090
C12	H122	1.100	1.090
C12	H123	1.100	1.091
C2	H2	1.080	1.079
C3	H3	1.081	1.080
C4	H4	1.080	1.080
C7	H7	1.080	1.080
C8	H8	1.080	1.080
C9	H9	1.080	1.080
CA	HA	1.100	1.090
CB	HB1C	1.101	1.091
CB	HB2C	1.100	1.090
ND2	HD21	1.000	0.970
ND2	HD22	1.000	0.970

Bond Angles for 9DN

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O2	S1	O3	116.6	123.1
O2	S1	C1	111.5	106.4
O3	S1	C1	107.0	106.4
S1	C1	C2	116.9	120.2
S1	C1	C6	122.3	120.2
S1	N	H	105.4	120.1
C10	N1	C11	112.7	111.0
C10	N1	C12	113.8	111.0
N1	C10	C5	118.8	120.3
N1	C10	C9	124.6	120.3
C11	N1	C12	106.2	111.0
N1	C11	H111	109.5	109.5
N1	C11	H112	109.5	109.5
N1	C11	H113	109.5	109.5
N1	C12	H121	109.5	109.4
N1	C12	H122	109.5	109.5
N1	C12	H123	109.5	109.4
C2	C1	C6	120.8	119.7
C1	C2	C3	121.7	120.9
C1	C2	H2	119.1	119.6
C1	C6	C5	116.1	119.4
C1	C6	C7	126.1	121.2
C2	C3	C4	120.2	121.0
C3	C2	H2	119.1	119.5
C2	C3	H3	119.9	119.5
C3	C4	C5	122.4	119.7
C4	C3	H3	119.9	119.5
C3	C4	H4	118.8	120.2
C4	C5	C6	118.8	119.4
C4	C5	C10	119.2	121.3
C5	C4	H4	118.8	120.1
C6	C5	C10	122.0	119.4
C5	C6	C7	117.8	119.4
C5	C10	C9	116.6	119.4
C6	C7	C8	121.6	120.0
C6	C7	H7	119.2	120.1
C7	C8	C9	121.0	121.1
C8	C7	H7	119.2	120.0
C7	C8	H8	119.5	119.4
C8	C9	C10	121.0	120.8
C9	C8	H8	119.5	119.5
C8	C9	H9	119.5	119.6
C10	C9	H9	119.5	119.6
N	CA	C	117.4	109.5
N	CA	CB	107.2	109.5
CA	N	H	105.4	120.0
N	CA	HA	105.9	109.4
C	CA	CB	110.5	109.5
CA	C	O	122.1	120.0
C	CA	HA	102.3	109.5
CA	CB	CG	112.8	109.5
CB	CA	HA	113.5	109.5
CA	CB	HB1C	108.4	109.5
CA	CB	HB2C	107.6	109.5
CB	CG	OD1	119.5	120.0
CB	CG	ND2	118.2	120.0
CG	CB	HB1C	108.4	109.4
CG	CB	HB2C	107.6	109.4
OD1	CG	ND2	122.4	120.0
CG	ND2	HD21	109.3	120.0
CG	ND2	HD22	125.3	120.0
H111	C11	H112	109.4	109.5
H111	C11	H113	109.4	109.4
H112	C11	H113	109.5	109.5
H121	C12	H122	109.4	109.5
H121	C12	H123	109.5	109.4
H122	C12	H123	109.5	109.5
HB1C	CB	HB2C	112.1	109.4
HD21	ND2	HD22	125.4	120.0

Torsion Angles for 9DN

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O3	S1	O2	C1	123.2	237.0
O2	S1	C1	C2	9.3	358.9
O2	S1	C1	C6	189.3	178.6
O2	S1	N	H	142.4	132.7
O2	S1	O3	C1	234.4	123.0
O3	S1	C1	C2	240.7	131.8
O3	S1	C1	C6	60.7	311.6
O3	S1	N	H	267.7	359.8
O2	S1	C1	O3	128.5	227.1
C1	S1	N	H	21.7	246.3
C2	C1	S1	C6	180.0	180.3
S1	C1	C2	C3	179.7	180.0
S1	C1	C2	H2	359.7	0.0
S1	C1	C6	C5	180.3	179.7
S1	C1	C6	C7	359.8	0.0
CA	N	S1	H	240.0	180.0
S1	N	CA	HA	37.3	22.7
OXT	C	CA	HA	31.6	60.0
C11	N1	C10	C12	239.1	236.1
C10	N1	C11	H111	74.0	60.0
C10	N1	C11	H112	194.0	180.0
C10	N1	C11	H113	314.0	300.0
C10	N1	C12	H121	165.5	60.0
C10	N1	C12	H122	285.5	180.0
C10	N1	C12	H123	45.5	300.0
C4	C5	C10	N1	0.3	359.9
C6	C5	C10	N1	179.8	180.2
C5	C10	N1	C9	179.7	179.2
C8	C9	C10	N1	179.9	180.1
N1	C10	C9	H9	359.9	359.4
C10	N1	C11	C12	125.2	124.0
C11	N1	C10	C5	137.2	120.0
C11	N1	C10	C9	317.5	300.9
C11	N1	C12	H121	290.0	183.9
C11	N1	C12	H122	50.0	304.0
C11	N1	C12	H123	170.0	64.0
H111	C11	N1	H112	240.0	240.0
H111	C11	N1	H113	120.0	119.9
H112	C11	N1	H113	239.9	240.0
C10	N1	C12	C11	235.5	236.0
C12	N1	C10	C5	258.1	244.0
C12	N1	C10	C9	78.4	64.8
C12	N1	C11	H111	308.8	296.0
C12	N1	C11	H112	68.8	56.0
C12	N1	C11	H113	188.9	176.1
H121	C12	N1	H122	240.0	239.9
H121	C12	N1	H123	120.0	119.9
H122	C12	N1	H123	240.0	240.0
S1	C1	C2	C6	180.0	179.7
C2	C1	C6	C5	0.3	359.4
C2	C1	C6	C7	179.8	179.7
C1	C2	C3	C4	0.3	0.0
C3	C2	C1	H2	180.0	180.0
C1	C2	C3	H3	180.3	180.0
S1	C1	C6	C2	180.0	180.3
C6	C1	C2	C3	359.7	0.3
C6	C1	C2	H2	179.7	180.3
C4	C5	C6	C1	359.7	0.6
C1	C6	C5	C10	180.1	180.3
C5	C6	C1	C7	180.5	179.7
C1	C6	C7	C8	180.1	180.0
C1	C6	C7	H7	0.1	360.0
C3	C2	C1	C6	359.7	0.3
C1	C2	C3	H2	180.0	180.0
C2	C3	C4	C5	359.7	0.0
C4	C3	C2	H3	180.0	180.0
C2	C3	C4	H4	179.7	179.9
C4	C3	C2	H2	180.3	180.0
C2	C3	C4	H3	180.0	180.0
C3	C4	C5	C6	0.4	359.7
C3	C4	C5	C10	180.0	180.0
C5	C4	C3	H4	180.0	180.1
N1	C10	C5	C4	0.3	359.9
C1	C6	C5	C4	359.7	0.6
C5	C4	C3	H3	179.7	180.0
C3	C4	C5	H4	180.0	179.9
C6	C5	C4	C10	180.4	179.6
C4	C5	C6	C7	180.2	180.3
C4	C5	C10	C9	180.0	179.1
N1	C10	C5	C6	179.8	180.2
C1	C6	C5	C7	179.5	180.3
C4	C5	C6	C10	179.6	180.4
C6	C5	C4	H4	180.4	179.8
C6	C5	C10	C9	359.5	359.4
C5	C6	C7	C8	359.6	0.3
C5	C6	C7	H7	179.6	180.3
C5	C10	N1	C11	137.2	120.0
C5	C10	N1	C12	258.1	244.0
N1	C10	C5	C9	180.3	180.8
C4	C5	C10	C6	180.4	179.6
C10	C5	C4	H4	360.0	0.1
C10	C5	C6	C7	0.6	360.0
C8	C9	C10	C5	0.2	0.9
C5	C10	C9	H9	180.2	180.3
C1	C6	C7	C5	180.6	179.7
C7	C6	C5	C10	0.6	360.0
C6	C7	C8	C9	0.2	360.0
C8	C7	C6	H7	180.0	180.1
C6	C7	C8	H8	180.2	180.0
C6	C7	C8	H7	180.0	179.9
C7	C8	C9	C10	359.9	359.4
C9	C8	C7	H8	180.0	180.0
C7	C8	C9	H9	179.9	180.0
N1	C10	C9	C8	179.9	180.1
C5	C10	C9	C8	0.2	0.9
C9	C8	C7	H7	180.2	180.0
C7	C8	C9	H8	180.0	180.0
C10	C9	C8	H9	180.0	179.4
C9	C10	N1	C11	317.5	300.9
C9	C10	N1	C12	78.4	64.8
N1	C10	C9	C5	179.7	179.2
C10	C9	C8	H8	179.9	179.4
C8	C9	C10	H9	180.0	180.6
S1	N	CA	H	120.0	180.0
C	CA	N	CB	125.0	120.0
N	CA	C	O	326.7	0.0
C	CA	N	HA	246.5	240.0
N	CA	CB	CG	228.6	295.0
CB	CA	N	HA	121.5	120.0
N	CA	CB	HB1C	348.6	55.0
N	CA	CB	HB2C	110.1	175.0
N	CA	C	CB	236.7	240.0
C	CA	N	H	163.8	82.7
N	CA	C	HA	115.5	120.0
C	CA	CB	CG	99.6	175.0
CB	CA	C	HA	238.8	240.0
C	CA	CB	HB1C	219.6	295.0
C	CA	CB	HB2C	341.0	55.0
N	CA	CB	C	129.1	120.0
CB	CA	N	H	38.8	322.7
N	CA	CB	HA	243.4	240.0
CB	CA	C	O	90.0	120.0
C	CA	CB	HA	114.3	120.0
CA	CB	CG	OD1	204.9	0.0
CA	CB	CG	ND2	25.3	180.0
CG	CB	CA	HB1C	240.0	240.0
CG	CB	CA	HB2C	118.5	120.0
HB1C	CB	CA	HB2C	238.6	240.0
O	C	CA	CB	90.0	120.0
O	C	CA	HA	211.2	240.0
CG	CB	CA	HA	345.3	55.0
CA	CB	CG	HB1C	120.0	120.1
CA	CB	CG	HB2C	241.4	240.0
OD1	CG	CB	ND2	179.6	180.1
CB	CG	ND2	HD21	359.8	0.1
CB	CG	ND2	HD22	179.8	180.0
HB1C	CB	CG	HB2C	121.4	119.9
CB	CG	OD1	ND2	180.4	179.9
OD1	CG	CB	HB1C	84.9	240.0
OD1	CG	CB	HB2C	323.5	120.1
OD1	CG	ND2	HD21	180.2	180.0
OD1	CG	ND2	HD22	0.2	359.9
CB	CG	ND2	OD1	179.6	180.1
ND2	CG	CB	HB1C	265.3	59.9
ND2	CG	CB	HB2C	143.9	300.0
HD21	ND2	CG	HD22	180.0	180.1
H	N	CA	C	163.8	82.7
H	N	CA	CB	38.8	322.7
H	N	CA	HA	277.3	202.7
H111	C11	N1	C12	308.8	296.0
N1	C11	H111	H112	120.0	120.0
N1	C11	H111	H113	240.0	240.0
H112	C11	H111	H113	120.0	120.0
H112	C11	N1	C12	68.8	56.0
N1	C11	H112	H111	240.0	239.9
N1	C11	H112	H113	120.0	120.0
H111	C11	H112	H113	240.0	240.1
H113	C11	N1	C12	188.9	176.1
N1	C11	H113	H111	120.0	120.0
N1	C11	H113	H112	240.0	240.0
H111	C11	H113	H112	120.0	120.0
N1	C12	H121	H122	120.0	120.1
N1	C12	H121	H123	240.0	240.1
H122	C12	H121	H123	120.0	120.0
N1	C12	H122	H121	240.0	240.0
N1	C12	H122	H123	120.0	120.0
H121	C12	H122	H123	240.0	240.0
N1	C12	H123	H121	120.0	119.9
N1	C12	H123	H122	240.0	240.0
H121	C12	H123	H122	120.0	120.1
H2	C2	C1	C6	179.7	180.3
C1	C2	H2	C3	180.0	180.0
H2	C2	C3	C4	180.3	180.0
H2	C2	C3	H3	0.3	0.0
C2	C3	H3	C4	180.0	180.0
H3	C3	C2	H2	0.3	0.0
H3	C3	C4	C5	179.7	180.0
H3	C3	C4	H4	359.7	359.9
C3	C4	H4	C5	180.0	180.1
H4	C4	C3	H3	359.7	359.9
H4	C4	C5	C6	180.4	179.8
H4	C4	C5	C10	360.0	0.1
C6	C7	H7	C8	180.0	180.1
H7	C7	C8	C9	180.2	180.0
H7	C7	C8	H8	0.2	0.0
C7	C8	H8	C9	180.0	180.0
H8	C8	C7	H7	0.2	0.0
H8	C8	C9	C10	179.9	179.4
H8	C8	C9	H9	359.9	0.0
C8	C9	H9	C10	180.0	179.4
H9	C9	C8	H8	359.9	0.0
N	CA	HA	C	236.4	240.0
N	CA	HA	CB	117.3	120.0
HA	CA	N	H	277.3	202.7
C	CA	HA	CB	240.9	240.0
HA	CA	C	O	211.2	240.0
HA	CA	CB	CG	345.3	55.0
HA	CA	CB	HB1C	105.3	175.0
HA	CA	CB	HB2C	226.7	295.0
CA	CB	HB1C	CG	237.3	239.9
HB1C	CB	CA	HA	105.3	175.0
CA	CB	HB1C	HB2C	118.6	120.1
HB1C	CB	CG	OD1	84.9	240.0
HB1C	CB	CG	ND2	265.3	59.9
CG	CB	HB1C	HB2C	241.4	240.1
CA	CB	HB2C	CG	121.9	120.0
HB2C	CB	CA	HA	226.7	295.0
CA	CB	HB2C	HB1C	240.9	239.9
HB2C	CB	CG	OD1	323.5	120.1
HB2C	CB	CG	ND2	143.9	300.0
CG	CB	HB2C	HB1C	119.1	119.9
CG	ND2	HD21	HD22	180.0	179.9
CG	ND2	HD22	HD21	180.0	180.1