PDB Chemical Component 9BN
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9BN
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| NAU |
CAO |
1.340 |
1.291 |
| NAU |
CBD |
1.349 |
1.315 |
| CAO |
SAX |
1.668 |
1.710 |
| CAB |
CBD |
1.528 |
1.508 |
| CBD |
CBF |
1.345 |
1.350 |
| SAX |
CBF |
1.701 |
1.762 |
| CBF |
CBE |
1.345 |
1.479 |
| CBE |
CAM |
1.404 |
1.395 |
| CBE |
CAN |
1.390 |
1.396 |
| CAM |
CAK |
1.400 |
1.380 |
| CAN |
CAL |
1.402 |
1.379 |
| CAK |
CBC |
1.400 |
1.384 |
| CAL |
CBC |
1.406 |
1.383 |
| CBC |
CAR |
1.422 |
1.507 |
| CAR |
NAV |
1.486 |
1.465 |
| NAV |
C |
1.363 |
1.348 |
| CB |
CA |
1.535 |
1.543 |
| CB |
CG |
1.502 |
1.552 |
| C |
O |
1.229 |
1.212 |
| C |
CA |
1.399 |
1.507 |
| CA |
N |
1.500 |
1.470 |
| CG |
OD1 |
1.435 |
1.429 |
| CG |
CD2 |
1.509 |
1.550 |
| N |
CD2 |
1.505 |
1.474 |
| N |
CBB |
1.360 |
1.347 |
| OAI |
CBB |
1.239 |
1.213 |
| CBB |
CBI |
1.562 |
1.508 |
| CAD |
CBK |
1.549 |
1.531 |
| CBI |
CBK |
1.561 |
1.530 |
| CBI |
NAW |
1.471 |
1.465 |
| CAE |
CBK |
1.539 |
1.529 |
| CBK |
CAC |
1.531 |
1.530 |
| NAW |
CBA |
1.347 |
1.348 |
| OAF |
CAY |
1.234 |
1.207 |
| CBA |
OAH |
1.234 |
1.213 |
| CBA |
CBL |
1.552 |
1.507 |
| CAY |
CAA |
1.544 |
1.506 |
| CAY |
CBL |
1.544 |
1.507 |
| CBL |
CAQ |
1.526 |
1.531 |
| CBL |
CAP |
1.524 |
1.530 |
| CAQ |
CAP |
1.532 |
1.530 |
| CAP |
H1 |
1.100 |
1.090 |
| CAP |
H2 |
1.100 |
1.090 |
| CAQ |
H3 |
1.100 |
1.090 |
| CAQ |
H4 |
1.100 |
1.090 |
| CAA |
H5 |
1.100 |
1.089 |
| CAA |
H6 |
1.100 |
1.091 |
| CAA |
H7 |
1.100 |
1.090 |
| NAW |
H8 |
1.000 |
0.969 |
| CBI |
H9 |
1.100 |
1.091 |
| CAE |
H10 |
1.100 |
1.090 |
| CAE |
H11 |
1.100 |
1.091 |
| CAE |
H12 |
1.100 |
1.089 |
| CAC |
H13 |
1.100 |
1.090 |
| CAC |
H14 |
1.100 |
1.091 |
| CAC |
H15 |
1.100 |
1.090 |
| CAD |
H16 |
1.100 |
1.090 |
| CAD |
H17 |
1.100 |
1.091 |
| CAD |
H18 |
1.100 |
1.090 |
| CD2 |
H19 |
1.101 |
1.090 |
| CD2 |
H20 |
1.100 |
1.090 |
| CG |
H21 |
1.100 |
1.091 |
| OD1 |
H22 |
0.950 |
0.966 |
| CB |
H23 |
1.100 |
1.090 |
| CB |
H24 |
1.100 |
1.090 |
| CA |
H25 |
1.101 |
1.090 |
| NAV |
H26 |
1.000 |
0.970 |
| CAR |
H27 |
1.099 |
1.091 |
| CAR |
H28 |
1.100 |
1.090 |
| CAK |
H29 |
1.080 |
1.080 |
| CAM |
H30 |
1.080 |
1.079 |
| CAL |
H31 |
1.080 |
1.080 |
| CAN |
H32 |
1.081 |
1.080 |
| CAO |
H33 |
1.080 |
1.080 |
| CAB |
H34 |
1.100 |
1.090 |
| CAB |
H35 |
1.099 |
1.090 |
| CAB |
H36 |
1.100 |
1.090 |
Bond Angles for 9BN
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| NAU |
CAO |
H33 |
125.9 |
124.8 |
| CBE |
CAM |
H30 |
119.3 |
120.1 |
| CBE |
CAN |
H32 |
119.6 |
120.1 |
| CAM |
CAK |
H29 |
119.6 |
120.0 |
| CAN |
CAL |
H31 |
119.3 |
119.9 |
| CBC |
CAR |
H27 |
108.6 |
109.5 |
| CBC |
CAR |
H28 |
108.6 |
109.5 |
| CAR |
NAV |
H26 |
117.6 |
120.0 |
| CA |
CB |
H23 |
110.5 |
110.7 |
| CA |
CB |
H24 |
110.4 |
110.7 |
| CB |
CA |
H25 |
109.1 |
109.9 |
| CB |
CG |
H21 |
110.9 |
111.0 |
| C |
CA |
H25 |
111.0 |
109.9 |
| OD1 |
CG |
H21 |
111.9 |
110.9 |
| CG |
OD1 |
H22 |
109.5 |
113.9 |
| CG |
CD2 |
H19 |
110.7 |
110.3 |
| CG |
CD2 |
H20 |
110.7 |
110.5 |
| N |
CD2 |
H19 |
110.7 |
110.4 |
| N |
CD2 |
H20 |
110.7 |
110.4 |
| CBB |
CBI |
H9 |
109.0 |
109.4 |
| CBI |
CBK |
CAC |
108.3 |
109.4 |
| CBK |
CBI |
H9 |
109.1 |
109.4 |
| CBI |
NAW |
H8 |
117.7 |
120.0 |
| CAE |
CBK |
CAC |
107.2 |
109.5 |
| CBK |
CAC |
H13 |
109.5 |
109.5 |
| CBK |
CAC |
H14 |
109.5 |
109.5 |
| CBK |
CAC |
H15 |
109.5 |
109.5 |
| OAF |
CAY |
CAA |
121.1 |
120.1 |
| CAY |
CAA |
H5 |
109.5 |
109.5 |
| CAY |
CAA |
H6 |
109.5 |
109.4 |
| CAY |
CAA |
H7 |
109.5 |
109.5 |
| CBL |
CAQ |
H3 |
120.1 |
117.5 |
| CBL |
CAQ |
H4 |
120.0 |
117.5 |
| CBL |
CAP |
H1 |
120.0 |
117.5 |
| CBL |
CAP |
H2 |
120.0 |
117.5 |
| CAQ |
CAP |
H1 |
120.0 |
117.5 |
| CAQ |
CAP |
H2 |
120.0 |
117.5 |
| H1 |
CAP |
H2 |
109.5 |
115.6 |
| H3 |
CAQ |
H4 |
109.5 |
115.6 |
| H5 |
CAA |
H6 |
109.4 |
109.5 |
| H5 |
CAA |
H7 |
109.4 |
109.5 |
| H6 |
CAA |
H7 |
109.5 |
109.5 |
| H10 |
CAE |
H11 |
109.5 |
109.4 |
| H10 |
CAE |
H12 |
109.5 |
109.5 |
| H11 |
CAE |
H12 |
109.4 |
109.5 |
| H13 |
CAC |
H14 |
109.5 |
109.5 |
| H13 |
CAC |
H15 |
109.4 |
109.5 |
| H14 |
CAC |
H15 |
109.5 |
109.4 |
| H16 |
CAD |
H17 |
109.5 |
109.4 |
| H16 |
CAD |
H18 |
109.4 |
109.6 |
| H17 |
CAD |
H18 |
109.5 |
109.5 |
| H19 |
CD2 |
H20 |
109.5 |
110.3 |
| H23 |
CB |
H24 |
109.5 |
110.8 |
| H27 |
CAR |
H28 |
109.5 |
109.4 |
| H34 |
CAB |
H35 |
109.5 |
109.4 |
| H34 |
CAB |
H36 |
109.4 |
109.5 |
| H35 |
CAB |
H36 |
109.5 |
109.5 |
Torsion Angles for 9BN
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CBD |
NAU |
CAO |
H33 |
179.6 |
179.8 |
| CBF |
CBE |
CAM |
H30 |
360.0 |
0.0 |
| CBF |
CBE |
CAN |
H32 |
0.3 |
0.0 |
| CBE |
CAM |
CAK |
H29 |
178.8 |
180.0 |
| CAN |
CBE |
CAM |
H30 |
181.6 |
179.7 |
| CBE |
CAN |
CAL |
H31 |
180.6 |
179.9 |
| CAK |
CBC |
CAR |
H27 |
280.1 |
330.0 |
| CAK |
CBC |
CAR |
H28 |
39.1 |
210.0 |
| CAL |
CBC |
CAR |
H27 |
100.4 |
149.7 |
| CAL |
CBC |
CAR |
H28 |
219.3 |
29.8 |
| CBC |
CAR |
NAV |
H26 |
83.6 |
0.0 |
| H27 |
CAR |
CBC |
H28 |
241.0 |
120.0 |
| NAV |
C |
CA |
H25 |
27.7 |
59.6 |
| CA |
CB |
CG |
H21 |
152.6 |
153.4 |
| C |
CA |
CB |
H25 |
120.8 |
121.1 |
| H23 |
CB |
CA |
H24 |
238.7 |
123.3 |
| OD1 |
CG |
CB |
H21 |
123.6 |
123.8 |
| CB |
CG |
OD1 |
H22 |
180.0 |
173.6 |
| CB |
CG |
CD2 |
H19 |
81.8 |
204.1 |
| CB |
CG |
CD2 |
H20 |
203.4 |
81.9 |
| O |
C |
CA |
H25 |
203.6 |
239.6 |
| C |
CA |
CB |
H23 |
340.1 |
99.7 |
| C |
CA |
CB |
H24 |
101.4 |
336.4 |
| CB |
CA |
C |
H25 |
240.4 |
238.9 |
| CA |
N |
CD2 |
H19 |
267.4 |
143.2 |
| CA |
N |
CD2 |
H20 |
145.8 |
265.4 |
| CB |
CG |
OD1 |
H21 |
237.0 |
236.1 |
| OD1 |
CG |
CD2 |
H19 |
198.4 |
322.2 |
| OD1 |
CG |
CD2 |
H20 |
320.0 |
200.0 |
| N |
CD2 |
CG |
H19 |
240.8 |
118.8 |
| N |
CD2 |
CG |
H20 |
119.2 |
241.1 |
| H19 |
CD2 |
CG |
H20 |
238.4 |
122.3 |
| CG |
CD2 |
N |
H19 |
119.2 |
241.2 |
| CG |
CD2 |
N |
H20 |
240.8 |
119.0 |
| H19 |
CD2 |
N |
H20 |
121.6 |
237.7 |
| N |
CBB |
CBI |
H9 |
27.8 |
26.1 |
| OAI |
CBB |
CBI |
H9 |
206.5 |
206.2 |
| CBK |
CBI |
CBB |
H9 |
239.5 |
240.1 |
| CBB |
CBI |
NAW |
H8 |
74.3 |
25.1 |
| CAD |
CBK |
CBI |
H9 |
294.3 |
298.5 |
| CAD |
CBK |
CAC |
H13 |
180.0 |
300.0 |
| CAD |
CBK |
CAC |
H14 |
300.0 |
60.0 |
| CAD |
CBK |
CAC |
H15 |
60.0 |
180.0 |
| CBB |
CBI |
CBK |
H9 |
120.5 |
119.9 |
| CBK |
CBI |
NAW |
H8 |
313.1 |
265.0 |
| CAE |
CBK |
CBI |
CAC |
118.6 |
240.0 |
| CBI |
CBK |
CAC |
H13 |
58.6 |
60.0 |
| CBI |
CBK |
CAC |
H14 |
178.6 |
180.0 |
| CBI |
CBK |
CAC |
H15 |
298.6 |
299.9 |
| CBI |
CBK |
CAE |
CAC |
240.7 |
120.0 |
| CAE |
CBK |
CBI |
H9 |
172.7 |
58.5 |
| CAE |
CBK |
CAC |
H13 |
296.3 |
180.0 |
| CAE |
CBK |
CAC |
H14 |
56.3 |
300.0 |
| CAE |
CBK |
CAC |
H15 |
176.3 |
60.0 |
| CAC |
CBK |
CBI |
H9 |
54.1 |
178.6 |
| H13 |
CAC |
CBK |
H14 |
240.0 |
240.0 |
| H13 |
CAC |
CBK |
H15 |
120.0 |
120.0 |
| H14 |
CAC |
CBK |
H15 |
240.0 |
240.0 |
| OAF |
CAY |
CAA |
H5 |
0.0 |
185.0 |
| OAF |
CAY |
CAA |
H6 |
120.0 |
305.0 |
| OAF |
CAY |
CAA |
H7 |
240.0 |
65.0 |
| CBA |
CBL |
CAQ |
H3 |
1.4 |
145.0 |
| CBA |
CBL |
CAQ |
H4 |
142.6 |
0.0 |
| CBA |
CBL |
CAP |
H1 |
217.3 |
360.0 |
| CBA |
CBL |
CAP |
H2 |
358.4 |
215.0 |
| H5 |
CAA |
CAY |
H6 |
240.0 |
240.0 |
| H5 |
CAA |
CAY |
H7 |
120.0 |
120.0 |
| H6 |
CAA |
CAY |
H7 |
240.0 |
240.0 |
| CAY |
CBL |
CAQ |
H3 |
220.6 |
359.9 |
| CAY |
CBL |
CAQ |
H4 |
1.7 |
215.0 |
| CAY |
CBL |
CAP |
H1 |
4.7 |
145.0 |
| CAY |
CBL |
CAP |
H2 |
145.8 |
0.0 |
| CAQ |
CBL |
CAP |
H1 |
109.4 |
252.5 |
| CAQ |
CBL |
CAP |
H2 |
250.5 |
107.5 |
| CBL |
CAQ |
CAP |
H1 |
250.5 |
107.5 |
| CBL |
CAQ |
CAP |
H2 |
109.4 |
252.5 |
| H3 |
CAQ |
CBL |
H4 |
218.8 |
144.9 |
| CAQ |
CAP |
CBL |
H1 |
250.6 |
107.5 |
| CAQ |
CAP |
CBL |
H2 |
109.5 |
252.5 |
| H1 |
CAP |
CBL |
H2 |
218.9 |
145.0 |
| CBL |
CAP |
CAQ |
H1 |
109.5 |
252.5 |
| CBL |
CAP |
CAQ |
H2 |
250.6 |
107.5 |
| H1 |
CAP |
CAQ |
H2 |
141.1 |
215.0 |
| CBL |
CAP |
H1 |
H2 |
144.8 |
214.3 |
| CAQ |
CAP |
H1 |
H2 |
215.2 |
145.6 |
| CBL |
CAP |
H2 |
H1 |
215.2 |
145.7 |
| CAQ |
CAP |
H2 |
H1 |
144.8 |
214.3 |
| CBL |
CAQ |
H3 |
H4 |
144.8 |
214.4 |
| H3 |
CAQ |
CAP |
H1 |
141.1 |
215.0 |
| H3 |
CAQ |
CAP |
H2 |
360.0 |
360.0 |
| CBL |
CAQ |
H4 |
H3 |
215.1 |
145.6 |
| H4 |
CAQ |
CAP |
H1 |
359.9 |
0.1 |
| H4 |
CAQ |
CAP |
H2 |
218.8 |
145.1 |
| CAY |
CAA |
H5 |
H6 |
120.0 |
120.0 |
| CAY |
CAA |
H5 |
H7 |
240.0 |
240.0 |
| H6 |
CAA |
H5 |
H7 |
120.0 |
120.0 |
| CAY |
CAA |
H6 |
H5 |
240.0 |
240.0 |
| CAY |
CAA |
H6 |
H7 |
120.0 |
120.0 |
| H5 |
CAA |
H6 |
H7 |
240.1 |
240.0 |
| CAY |
CAA |
H7 |
H5 |
120.1 |
120.0 |
| CAY |
CAA |
H7 |
H6 |
240.0 |
240.0 |
| H5 |
CAA |
H7 |
H6 |
119.9 |
120.0 |
| H9 |
CBI |
CBK |
CAC |
54.1 |
178.6 |
| H9 |
CBI |
NAW |
H8 |
192.9 |
145.0 |
| H10 |
CAE |
CBK |
CAC |
63.0 |
300.0 |
| H11 |
CAE |
H10 |
H12 |
120.0 |
120.0 |
| H11 |
CAE |
CBK |
CAC |
183.0 |
60.0 |
| H10 |
CAE |
H11 |
H12 |
240.0 |
240.0 |
| H12 |
CAE |
CBK |
CAC |
302.9 |
180.0 |
| H10 |
CAE |
H12 |
H11 |
120.0 |
120.0 |
| CBK |
CAC |
H13 |
H14 |
120.0 |
120.0 |
| CBK |
CAC |
H13 |
H15 |
240.0 |
240.0 |
| H14 |
CAC |
H13 |
H15 |
120.0 |
119.9 |
| CBK |
CAC |
H14 |
H13 |
240.0 |
240.0 |
| CBK |
CAC |
H14 |
H15 |
120.0 |
120.0 |
| H13 |
CAC |
H14 |
H15 |
240.0 |
240.0 |
| CBK |
CAC |
H15 |
H13 |
120.0 |
120.1 |
| CBK |
CAC |
H15 |
H14 |
240.0 |
240.0 |
| H13 |
CAC |
H15 |
H14 |
120.0 |
120.0 |
| H17 |
CAD |
H16 |
H18 |
120.0 |
120.0 |
| H16 |
CAD |
H17 |
H18 |
240.0 |
239.9 |
| H16 |
CAD |
H18 |
H17 |
120.0 |
120.0 |
| CG |
CD2 |
H19 |
H20 |
122.3 |
237.7 |
| N |
CD2 |
H19 |
H20 |
237.7 |
122.3 |
| CG |
CD2 |
H20 |
H19 |
237.7 |
122.3 |
| N |
CD2 |
H20 |
H19 |
122.3 |
237.7 |
| H21 |
CG |
OD1 |
H22 |
303.0 |
297.5 |
| H21 |
CG |
CD2 |
H19 |
323.1 |
86.1 |
| H21 |
CG |
CD2 |
H20 |
84.7 |
323.8 |
| H22 |
OD1 |
CG |
H21 |
303.0 |
297.5 |
| CA |
CB |
H23 |
H24 |
121.8 |
236.7 |
| H23 |
CB |
CA |
H25 |
219.3 |
338.6 |
| H23 |
CB |
CG |
H21 |
33.3 |
271.9 |
| CA |
CB |
H24 |
H23 |
238.2 |
123.3 |
| H24 |
CB |
CA |
H25 |
340.5 |
215.3 |
| H24 |
CB |
CG |
H21 |
272.0 |
35.1 |
| H25 |
CA |
CB |
H23 |
219.3 |
338.6 |
| H25 |
CA |
CB |
H24 |
340.5 |
215.3 |
| CBC |
CAR |
H27 |
H28 |
118.4 |
240.0 |
| H27 |
CAR |
NAV |
H26 |
323.0 |
120.0 |
| CBC |
CAR |
H28 |
H27 |
241.6 |
120.0 |
| H28 |
CAR |
NAV |
H26 |
204.1 |
240.0 |
| H30 |
CAM |
CAK |
H29 |
358.8 |
360.0 |
| H32 |
CAN |
CAL |
H31 |
0.6 |
360.0 |
| H35 |
CAB |
H34 |
H36 |
120.0 |
120.0 |
| H34 |
CAB |
H35 |
H36 |
240.0 |
240.0 |
| H34 |
CAB |
H36 |
H35 |
120.0 |
120.0 |