PDB Chemical Component 9BD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 9BD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	O1	1.428	1.430
C2	O1	1.429	1.429
C2	C3	1.524	1.530
C6	C5	1.382	1.402
C6	C7	1.406	1.415
C6	N2	1.337	1.344
C9	C4	1.405	1.399
C9	C8	1.394	1.379
C9	O3	1.371	1.360
C12	C11	1.413	1.393
C12	C13	1.394	1.385
C15	C11	1.408	1.418
C15	C14	1.402	1.407
C15	C16	1.393	1.407
C18	C17	1.384	1.346
C18	N5	1.370	1.342
C3	O2	1.422	1.429
O2	C4	1.367	1.359
C4	C5	1.395	1.377
C7	C8	1.414	1.395
C7	C11	1.435	1.464
O3	C10	1.424	1.429
C13	N1	1.356	1.328
C13	N4	1.427	1.398
N1	C14	1.345	1.322
C14	N3	1.381	1.384
C16	N2	1.344	1.305
N4	C17	1.384	1.372
N4	C19	1.388	1.360
N5	C19	1.321	1.305
C1	H1	1.100	1.090
C1	H1A	1.100	1.090
C1	H1B	1.100	1.090
C2	H2	1.100	1.090
C2	H2A	1.100	1.089
C12	H12	1.080	1.080
C18	H18	1.080	1.081
C3	H3	1.100	1.090
C3	H3A	1.100	1.090
C5	H5	1.080	1.081
C8	H8	1.080	1.080
C10	H10	1.100	1.091
C10	H10A	1.100	1.090
C10	H10B	1.100	1.089
C16	H16	1.080	1.080
N3	HN3	1.000	0.970
N3	HN3A	1.000	0.970
C17	H17	1.080	1.079
C19	H19	1.080	1.080

Bond Angles for 9BD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C1	O1	C2	111.9	114.0
O1	C1	H1	109.5	109.4
O1	C1	H1A	109.4	109.5
O1	C1	H1B	109.4	109.5
O1	C2	C3	108.1	109.5
O1	C2	H2	109.9	109.5
O1	C2	H2A	110.2	109.5
C2	C3	O2	109.0	109.4
C3	C2	H2	109.9	109.5
C3	C2	H2A	110.2	109.4
C2	C3	H3	109.6	109.5
C2	C3	H3A	109.7	109.4
C5	C6	C7	119.8	119.1
C5	C6	N2	116.9	120.6
C6	C5	C4	122.2	120.0
C6	C5	H5	118.9	120.0
C7	C6	N2	123.4	120.3
C6	C7	C8	117.9	120.2
C6	C7	C11	118.1	117.9
C6	N2	C16	117.7	123.4
C4	C9	C8	118.6	120.3
C4	C9	O3	117.7	119.8
C9	C4	O2	116.2	119.7
C9	C4	C5	119.2	120.6
C8	C9	O3	123.7	119.8
C9	C8	C7	122.3	119.8
C9	C8	H8	118.8	120.1
C9	O3	C10	118.2	117.0
C11	C12	C13	119.6	118.6
C12	C11	C15	117.4	118.9
C12	C11	C7	124.3	123.4
C11	C12	H12	120.2	120.7
C12	C13	N1	122.3	121.5
C12	C13	N4	121.1	119.3
C13	C12	H12	120.2	120.7
C11	C15	C14	119.5	118.5
C11	C15	C16	117.7	118.9
C15	C11	C7	118.3	117.7
C14	C15	C16	122.9	122.5
C15	C14	N1	122.4	120.0
C15	C14	N3	122.3	120.0
C15	C16	N2	124.9	121.7
C15	C16	H16	117.5	119.1
C17	C18	N5	111.4	108.2
C18	C17	N4	105.9	106.8
C17	C18	H18	124.3	125.9
C18	C17	H17	127.0	126.6
C18	N5	C19	104.2	109.4
N5	C18	H18	124.3	125.9
C3	O2	C4	120.1	117.0
O2	C3	H3	109.6	109.5
O2	C3	H3A	109.7	109.5
O2	C4	C5	124.6	119.7
C4	C5	H5	118.9	120.0
C8	C7	C11	124.0	121.9
C7	C8	H8	118.8	120.1
O3	C10	H10	109.5	109.5
O3	C10	H10A	109.5	109.5
O3	C10	H10B	109.5	109.5
N1	C13	N4	116.7	119.2
C13	N1	C14	118.8	122.5
C13	N4	C17	130.8	126.5
C13	N4	C19	124.2	126.4
N1	C14	N3	115.3	120.0
C14	N3	HN3	109.5	120.0
C14	N3	HN3A	109.4	120.0
N2	C16	H16	117.5	119.2
C17	N4	C19	105.0	107.1
N4	C17	H17	127.0	126.6
N4	C19	N5	113.4	108.5
N4	C19	H19	123.3	125.7
N5	C19	H19	123.3	125.8
H1	C1	H1A	109.5	109.5
H1	C1	H1B	109.5	109.5
H1A	C1	H1B	109.5	109.5
H2	C2	H2A	108.4	109.5
H3	C3	H3A	109.1	109.5
H10	C10	H10A	109.5	109.4
H10	C10	H10B	109.5	109.5
H10A	C10	H10B	109.4	109.5
HN3	N3	HN3A	109.4	120.0

Torsion Angles for 9BD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C1	O1	C2	C3	117.4	180.0
C1	O1	C2	H2	237.4	300.0
C1	O1	C2	H2A	356.9	60.0
H1	C1	O1	H1A	240.0	240.0
H1	C1	O1	H1B	120.0	120.0
H1A	C1	O1	H1B	240.0	240.0
C2	O1	C1	H1	229.7	300.0
C2	O1	C1	H1A	349.7	60.0
C2	O1	C1	H1B	109.7	180.0
O1	C2	C3	O2	236.9	65.0
C3	C2	O1	H2	240.0	240.0
C3	C2	O1	H2A	120.5	120.0
O1	C2	C3	H3	356.9	185.0
O1	C2	C3	H3A	116.7	305.1
H2	C2	O1	H2A	240.5	240.0
O1	C2	C3	H2	120.0	120.0
O1	C2	C3	H2A	239.5	240.0
C2	C3	O2	C4	187.4	180.0
O2	C3	C2	H3	240.0	240.0
O2	C3	C2	H3A	120.2	119.9
H2	C2	C3	H2A	119.5	120.0
H3	C3	C2	H3A	240.2	239.9
C7	C6	C5	N2	179.7	179.7
C5	C6	C7	C8	0.6	0.1
C5	C6	C7	C11	179.9	180.0
C5	C6	N2	C16	179.8	180.0
C9	C4	C5	C6	0.4	0.0
O2	C4	C5	C6	180.2	180.0
C4	C5	C6	H5	180.0	180.0
C5	C6	C7	N2	180.3	180.3
C7	C6	C5	C4	359.5	360.0
C7	C6	C5	H5	179.6	180.0
C7	C6	N2	C16	0.1	0.3
C9	C8	C7	C6	359.4	359.9
C12	C11	C7	C6	180.3	180.0
C15	C11	C7	C6	0.3	0.0
C8	C7	C6	C11	180.7	180.1
C6	C7	C8	H8	179.3	180.1
C5	C6	N2	C7	179.7	179.7
N2	C6	C5	C4	179.8	180.3
N2	C6	C5	H5	359.9	0.3
N2	C6	C7	C8	180.3	179.8
N2	C6	C7	C11	359.6	359.7
C15	C16	N2	C6	0.5	0.1
C6	N2	C16	H16	180.4	179.7
C6	C5	C4	C9	0.4	0.0
C8	C9	C4	O3	179.5	179.9
C4	C9	C8	C7	0.6	0.1
C4	C9	C8	H8	180.6	179.9
C4	C9	O3	C10	142.0	180.0
C3	O2	C4	C9	176.7	180.0
O2	C4	C9	C5	180.2	180.0
C9	C4	C5	H5	180.4	180.0
C6	C7	C8	C9	359.4	359.9
C4	C9	C8	O3	180.6	180.1
C8	C9	C4	O2	179.8	180.0
C8	C9	C4	C5	359.6	359.9
C8	C9	O3	C10	322.5	0.1
C9	C8	C7	C11	180.1	180.0
C7	C8	C9	H8	180.0	180.2
C4	C9	O3	C8	179.4	179.9
O3	C9	C4	O2	0.3	0.0
O3	C9	C4	C5	180.1	180.0
O3	C9	C8	C7	180.0	180.0
O3	C9	C8	H8	0.0	359.9
C9	O3	C10	H10	324.8	180.0
C9	O3	C10	H10A	84.8	299.9
C9	O3	C10	H10B	204.8	60.0
C6	C7	C11	C12	180.3	180.0
C11	C12	C13	N1	359.8	0.0
C11	C12	C13	N4	178.7	180.0
C13	C12	C11	H12	180.0	180.0
C12	C11	C15	C14	359.7	0.0
C12	C11	C15	C16	180.1	180.3
C15	C11	C12	C7	180.0	180.0
C8	C7	C11	C12	359.6	359.9
C13	C12	C11	C15	0.2	0.0
C13	C12	C11	C7	180.1	180.0
C11	C12	C13	H12	180.0	180.0
N1	C13	C12	N4	181.1	180.0
C12	C13	N1	C14	0.4	359.9
C12	C13	N4	C17	14.7	180.0
C12	C13	N4	C19	195.3	0.0
C6	C7	C11	C15	0.3	0.0
C15	C11	C12	C13	0.2	0.0
C12	C11	C15	C7	180.0	180.0
C15	C11	C12	H12	180.2	180.0
C14	C15	C11	C16	179.5	179.7
C11	C15	C14	N1	0.5	359.9
C11	C15	C14	N3	179.4	180.0
C11	C15	C16	N2	359.4	359.6
C11	C15	C16	H16	179.4	180.0
C8	C7	C11	C15	179.5	180.0
C11	C15	C14	C16	180.5	180.3
C14	C15	C11	C7	179.7	180.0
C14	C15	C16	N2	179.9	180.0
C14	C15	C16	H16	359.9	0.3
C13	N1	C14	C15	359.5	0.1
N1	C14	C15	N3	181.2	179.9
C15	C14	N3	HN3	67.8	0.0
C15	C14	N3	HN3A	187.8	179.9
C6	N2	C16	C15	0.5	0.1
C11	C15	C16	C14	179.5	179.7
C16	C15	C11	C7	0.2	0.3
C16	C15	C14	N1	180.0	179.6
C16	C15	C14	N3	358.9	359.7
N2	C16	C15	H16	180.0	179.6
C17	C18	N5	C19	360.0	0.0
N5	C18	C17	H18	180.0	180.2
C13	N4	C17	C18	180.3	180.0
C18	C17	N4	C19	359.8	0.0
N4	C17	C18	H17	180.0	180.0
N5	C18	C17	N4	0.2	360.0
C17	C18	N5	H18	180.0	179.8
N5	C18	C17	H17	180.1	180.0
N4	C19	N5	C18	359.9	360.0
C18	N5	C19	H19	179.9	180.0
O2	C3	C2	H2	116.9	305.0
O2	C3	C2	H2A	357.4	185.0
C2	C3	O2	H3	120.0	120.0
C2	C3	O2	H3A	239.8	240.1
C9	C4	O2	C3	176.7	180.0
C3	O2	C4	C5	356.9	0.0
H3	C3	O2	H3A	119.8	120.1
C6	C5	C4	O2	180.2	180.0
O2	C4	C9	C8	179.8	180.0
O2	C4	C9	O3	0.3	0.0
C9	C4	O2	C5	179.8	180.0
C4	O2	C3	H3	67.4	60.0
C4	O2	C3	H3A	307.6	299.9
O2	C4	C5	H5	0.2	360.0
C4	C5	C6	C7	359.5	360.0
C4	C5	C6	N2	179.8	180.3
C6	C5	C4	H5	180.0	180.0
C5	C4	C9	C8	359.6	359.9
C5	C4	C9	O3	180.1	180.0
C9	C4	C5	O2	180.2	180.0
C8	C7	C6	N2	180.3	179.8
C6	C7	C8	C11	179.3	179.9
C7	C8	C9	O3	180.0	180.0
C9	C8	C7	H8	180.0	179.8
C12	C11	C7	C8	359.6	359.9
C15	C11	C7	C8	179.5	180.0
C11	C7	C6	N2	359.6	359.7
C6	C7	C11	C8	180.7	180.1
C7	C11	C12	C13	180.1	180.0
C12	C11	C7	C15	180.0	180.0
C7	C11	C12	H12	0.1	0.1
C7	C11	C15	C14	179.7	180.0
C7	C11	C15	C16	0.2	0.3
C11	C7	C8	H8	0.1	0.1
H10	C10	O3	H10A	240.0	240.1
H10	C10	O3	H10B	120.0	120.0
H10A	C10	O3	H10B	240.0	239.9
C12	C13	N1	N4	179.0	180.0
N1	C13	C12	H12	179.8	180.0
C15	C14	N1	C13	359.5	0.1
N1	C13	N4	C17	193.7	360.0
N1	C13	N4	C19	14.3	180.0
C13	N1	C14	N3	180.5	180.1
C12	C13	N4	N1	181.0	180.0
N4	C13	C12	H12	358.7	360.0
C18	C17	N4	C13	180.3	180.0
N4	C13	N1	C14	181.4	179.9
C17	N4	C13	C19	179.4	180.0
C13	N4	C17	H17	0.3	360.0
C13	N4	C19	N5	179.8	180.0
C13	N4	C19	H19	359.8	360.0
N1	C14	C15	C16	180.0	179.6
C15	C14	N1	N3	178.9	180.1
C14	N1	C13	N4	181.4	179.9
N1	C14	N3	HN3	246.7	180.1
N1	C14	N3	HN3A	6.7	0.0
N3	C14	C15	C16	358.9	359.7
C15	C14	N3	N1	181.1	179.9
HN3	N3	C14	HN3A	240.0	180.1
C15	C16	N2	H16	180.0	180.4
N4	C17	C18	N5	0.2	360.0
N4	C17	C18	H18	180.1	179.8
C18	C17	N4	H17	180.0	180.0
C13	N4	C17	C19	180.5	180.0
C17	N4	C19	N5	0.2	0.0
C17	N4	C19	H19	180.2	180.0
C18	N5	C19	N4	359.9	360.0
C13	N4	C19	C17	179.5	180.0
C19	N4	C17	H17	179.8	180.0
N5	C19	N4	H19	180.0	180.1
C19	N5	C18	H18	180.0	180.2
N4	C19	N5	H19	180.0	179.9
H1	C1	O1	C2	229.7	300.0
O1	C1	H1	H1A	120.0	120.0
O1	C1	H1	H1B	240.0	240.0
H1A	C1	H1	H1B	120.0	120.0
H1A	C1	O1	C2	349.7	60.0
O1	C1	H1A	H1	240.0	240.1
O1	C1	H1A	H1B	119.9	120.0
H1	C1	H1A	H1B	240.0	239.9
H1B	C1	O1	C2	109.7	180.0
O1	C1	H1B	H1	120.0	120.0
O1	C1	H1B	H1A	240.1	240.0
H1	C1	H1B	H1A	120.0	120.0
O1	C2	H2	C3	241.1	240.0
O1	C2	H2	H2A	120.5	120.0
H2	C2	C3	O2	116.9	305.0
C3	C2	H2	H2A	239.4	240.0
H2	C2	C3	H3	236.9	65.0
H2	C2	C3	H3A	356.7	185.0
O1	C2	H2A	C3	119.3	120.0
O1	C2	H2A	H2	239.6	240.0
H2A	C2	C3	O2	357.4	185.0
C3	C2	H2A	H2	120.4	120.0
H2A	C2	C3	H3	117.4	305.0
H2A	C2	C3	H3A	237.2	65.1
C11	C12	H12	C13	180.0	180.0
H12	C12	C11	C15	180.2	180.0
H12	C12	C11	C7	0.1	0.1
H12	C12	C13	N1	179.8	180.0
H12	C12	C13	N4	358.7	360.0
C17	C18	H18	N5	180.0	180.2
H18	C18	C17	N4	180.1	179.8
H18	C18	C17	H17	0.1	359.8
H18	C18	N5	C19	180.0	180.2
C2	C3	H3	O2	240.4	240.0
H3	C3	C2	H2	236.9	65.0
H3	C3	C2	H2A	117.4	305.0
C2	C3	H3	H3A	120.2	120.0
H3	C3	O2	C4	67.4	60.0
O2	C3	H3	H3A	239.8	240.0
C2	C3	H3A	O2	119.8	119.9
H3A	C3	C2	H2	356.7	185.0
H3A	C3	C2	H2A	237.2	65.1
C2	C3	H3A	H3	239.9	240.0
H3A	C3	O2	C4	307.6	299.9
O2	C3	H3A	H3	120.1	120.1
H5	C5	C6	C7	179.6	180.0
H5	C5	C6	N2	359.9	0.3
C6	C5	H5	C4	180.0	180.0
H8	C8	C9	O3	0.0	359.9
C9	C8	H8	C7	180.0	180.2
H8	C8	C7	C11	0.1	0.1
O3	C10	H10	H10A	120.0	120.0
O3	C10	H10	H10B	240.0	240.0
H10A	C10	H10	H10B	120.0	120.0
O3	C10	H10A	H10	240.0	240.0
O3	C10	H10A	H10B	120.0	120.1
H10	C10	H10A	H10B	240.0	240.0
O3	C10	H10B	H10	120.0	120.0
O3	C10	H10B	H10A	240.0	240.0
H10	C10	H10B	H10A	120.0	119.9
C15	C16	H16	N2	180.0	179.6
C14	N3	HN3	HN3A	120.0	179.9
C14	N3	HN3A	HN3	240.0	180.1
H17	C17	C18	N5	180.1	180.0
C18	C17	H17	N4	180.0	180.0
H17	C17	C18	H18	0.1	359.8
H17	C17	N4	C19	179.8	180.0
N4	C19	H19	N5	180.0	180.1