Atom Nomenclature for 9B6

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9B6

Atom Name (V3) Atom Name (V2)
C01 C01
O05 O05
C06 C06
N07 N07
C08 C08
C09 C09
N10 N10
C11 C11
C12 C12
C14 C14
C16 C16
C18 C18
C20 C20
O21 O21
C22 C22
F23 F23
F24 F24
F25 F25
C26 C26
O27 O27
N28 N28
C30 C30
C31 C31
N33 N33
C34 C34
C35 C35
C37 C37
C38 C38
C39 C39
C40 C40
N44 N44
O45 O45
C46 C46
C47 C47
H011 H011
H012 H012
H013 H013
H12 H12
H14 H14
H16 H16
H18 H18
H28 H28
H31 H31
H35 H35
H401 H401
H402 H402
H403 H403
H471 H471
H472 H472
H473 H473