PDB Chemical Component 9AM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 9AM

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.390	1.474
C1	O1A	1.252	1.215
C1	O1B	1.252	1.348
C2	C3	1.363	1.318
C2	O6	1.388	1.344
C3	C4	1.549	1.508
C3	H3	1.103	1.080
C4	C5	1.528	1.535
C4	O4	1.384	1.428
C4	H4	1.115	1.090
C5	C6	1.546	1.534
C5	N5	1.475	1.464
C5	H5	1.115	1.090
C6	C7	1.577	1.530
C6	O6	1.471	1.422
C6	H6	1.115	1.089
C7	C8	1.519	1.530
C7	O7	1.448	1.429
C7	H7	1.115	1.090
C8	C9	1.519	1.529
C8	O8	1.376	1.429
C8	H8	1.115	1.090
C9	N9	1.488	1.469
C9	H91	1.114	1.090
C9	H92	1.114	1.090
C10	C11	1.540	1.506
C10	N5	1.331	1.347
C10	O10	1.231	1.214
C11	H111	1.115	1.089
C11	H112	1.116	1.090
C11	H113	1.115	1.089
N5	HN5	1.021	0.970
O1B	HOB1	0.949	0.967
O4	HO4	0.951	0.967
O7	HO7	0.949	0.967
O8	HO8	0.949	0.967
N9	HN91	1.020	1.009
N9	HN92	1.020	1.009

Bond Angles for 9AM

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1A	116.4	120.0
C2	C1	O1B	121.6	120.0
C1	C2	C3	125.5	116.8
C1	C2	O6	115.9	116.8
O1A	C1	O1B	122.0	120.0
C1	O1B	HOB1	121.6	120.0
C3	C2	O6	118.5	126.5
C2	C3	C4	121.6	122.3
C2	C3	H3	112.7	118.9
C2	O6	C6	122.3	110.2
C4	C3	H3	125.7	118.9
C3	C4	C5	110.6	108.1
C3	C4	O4	106.1	109.7
C3	C4	H4	111.2	109.7
C5	C4	O4	110.2	109.8
C5	C4	H4	107.2	109.7
C4	C5	C6	108.3	107.5
C4	C5	N5	109.5	109.9
C4	C5	H5	110.6	109.8
O4	C4	H4	111.5	109.7
C4	O4	HO4	106.2	106.8
C6	C5	N5	110.5	109.9
C6	C5	H5	109.6	109.8
C5	C6	C7	114.5	109.6
C5	C6	O6	109.3	109.3
C5	C6	H6	105.2	109.4
N5	C5	H5	108.4	109.8
C5	N5	C10	123.6	120.1
C5	N5	HN5	123.7	120.0
C7	C6	O6	106.5	109.5
C7	C6	H6	108.2	109.5
C6	C7	C8	107.9	109.5
C6	C7	O7	106.2	109.5
C6	C7	H7	113.0	109.5
O6	C6	H6	113.4	109.5
C8	C7	O7	110.8	109.4
C8	C7	H7	108.6	109.5
C7	C8	C9	113.5	109.6
C7	C8	O8	107.6	109.4
C7	C8	H8	107.9	109.5
O7	C7	H7	110.3	109.4
C7	O7	HO7	106.1	106.8
C9	C8	O8	109.0	109.4
C9	C8	H8	106.5	109.5
C8	C9	N9	112.7	109.5
C8	C9	H91	111.0	109.4
C8	C9	H92	111.0	109.5
O8	C8	H8	112.4	109.4
C8	O8	HO8	107.7	106.8
N9	C9	H91	111.0	109.5
N9	C9	H92	111.1	109.5
C9	N9	HN91	112.7	106.7
C9	N9	HN92	111.0	106.7
H91	C9	H92	99.3	109.4
C11	C10	N5	117.7	120.1
C11	C10	O10	119.4	120.0
C10	C11	H111	117.7	109.5
C10	C11	H112	109.2	109.4
C10	C11	H113	109.3	109.5
N5	C10	O10	122.9	120.0
C10	N5	HN5	112.7	119.9
H111	C11	H112	109.2	109.4
H111	C11	H113	109.3	109.5
H112	C11	H113	100.8	109.5
HN91	N9	HN92	111.0	106.7

Torsion Angles for 9AM

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1A	C1	C2	O1B	179.9	180.0
C2	C1	O1B	HOB1	180.0	180.0
C3	C2	C1	O6	176.5	179.9
C1	C2	C3	C4	169.4	179.2
C1	C2	C3	H3	349.4	359.2
C1	C2	O6	C6	197.5	203.9
C2	C1	O1A	O1B	180.1	180.0
O1A	C1	C2	C3	180.4	360.0
O1A	C1	C2	O6	3.8	180.0
O1A	C1	O1B	HOB1	0.1	360.0
C2	C1	O1B	O1A	179.9	180.0
O1B	C1	C2	C3	0.4	180.0
O1B	C1	C2	O6	183.9	0.0
C3	C2	C1	O1A	180.4	360.0
C3	C2	C1	O1B	0.4	180.0
C1	C2	C3	O6	183.5	180.1
C3	C2	O6	C6	20.7	23.9
C4	C3	C2	H3	180.0	179.9
C2	C3	C4	C5	31.7	12.0
C2	C3	C4	O4	151.2	131.7
C2	C3	C4	H4	272.7	252.4
O6	C2	C1	O1A	3.8	180.0
O6	C2	C1	O1B	183.9	0.0
C1	C2	O6	C3	176.8	179.9
O6	C2	C3	C4	345.9	359.1
O6	C2	C3	H3	165.9	179.2
C5	C6	O6	C2	317.0	303.1
C7	C6	O6	C2	192.9	183.0
C2	O6	C6	H6	74.1	62.9
C4	C3	C2	O6	345.9	359.1
C2	C3	C4	H3	180.0	180.1
C5	C4	C3	O4	240.5	240.3
C5	C4	C3	H4	119.0	119.6
C3	C4	C5	C6	308.3	317.4
C3	C4	C5	N5	187.8	197.8
C3	C4	C5	H5	68.4	76.8
O4	C4	C3	H4	238.5	239.4
C3	C4	O4	HO4	179.9	61.3
H3	C3	C2	O6	165.9	179.2
C2	C3	H3	C4	180.0	179.9
H3	C3	C4	C5	211.7	191.9
H3	C3	C4	O4	331.2	311.7
H3	C3	C4	H4	92.6	72.3
C5	C4	C3	H3	211.7	191.9
C3	C4	C5	O4	117.0	119.7
C3	C4	C5	H4	238.6	240.4
O4	C4	C5	H4	121.6	120.7
C5	C4	O4	HO4	299.7	180.1
C6	C5	C4	N5	120.5	119.6
C6	C5	C4	H5	239.9	240.6
C4	C5	C6	C7	176.4	188.6
C4	C5	C6	O6	57.1	68.6
C4	C5	C6	H6	295.0	308.7
N5	C5	C4	H5	119.3	121.0
C4	C5	N5	C10	239.7	269.1
C4	C5	N5	HN5	59.7	89.0
O4	C4	C3	H3	331.2	311.7
C3	C4	O4	C5	240.2	241.3
C3	C4	O4	H4	121.2	120.6
C5	C4	O4	H4	241.0	239.3
O4	C4	C5	C6	191.2	197.7
O4	C4	C5	N5	70.7	78.1
O4	C4	C5	H5	311.4	317.1
H4	C4	C3	H3	92.6	72.3
C3	C4	H4	C5	121.0	118.6
C3	C4	H4	O4	241.7	239.4
C5	C4	H4	O4	120.7	120.7
H4	C4	C5	C6	69.7	77.0
H4	C4	C5	N5	309.1	317.4
H4	C4	C5	H5	189.8	196.4
H4	C4	O4	HO4	58.7	300.7
C2	O6	C6	C5	317.0	303.1
C6	C5	C4	O4	191.2	197.7
C6	C5	C4	H4	69.7	77.0
C4	C5	C6	N5	240.1	240.4
C4	C5	C6	H5	120.7	119.4
N5	C5	C6	H5	240.6	239.0
C6	C5	N5	C10	120.6	151.0
C6	C5	N5	HN5	300.5	331.0
C7	C6	C5	O6	119.3	120.0
C7	C6	C5	H6	241.4	239.9
C5	C6	C7	C8	173.1	180.1
C5	C6	C7	O7	291.9	300.1
C5	C6	C7	H7	52.9	60.1
O6	C6	C5	H6	122.1	119.9
N5	C5	C4	O4	70.7	78.1
N5	C5	C4	H4	309.1	317.4
C4	C5	N5	C6	119.2	118.1
C4	C5	N5	H5	239.3	239.0
C6	C5	N5	H5	120.1	121.0
N5	C5	C6	C7	296.3	308.2
N5	C5	C6	O6	177.0	188.1
N5	C5	C6	H6	54.9	68.2
C11	C10	N5	C5	179.0	180.0
C5	N5	C10	O10	358.8	0.0
C10	N5	C5	HN5	180.1	180.1
H5	C5	C4	O4	311.4	317.1
H5	C5	C4	H4	189.8	196.4
C4	C5	H5	C6	240.7	242.0
C4	C5	H5	N5	120.0	121.0
C6	C5	H5	N5	239.3	239.0
H5	C5	C6	C7	55.7	69.2
H5	C5	C6	O6	296.4	309.1
H5	C5	C6	H6	174.3	189.2
H5	C5	N5	C10	0.4	30.0
H5	C5	N5	HN5	180.4	210.0
C2	O6	C6	C7	192.9	183.0
C7	C6	C5	N5	296.3	308.2
C7	C6	C5	H5	55.7	69.2
C5	C6	C7	O6	239.1	240.1
C5	C6	C7	H6	116.9	120.0
O6	C6	C7	H6	237.8	239.9
C8	C7	C6	O7	241.2	240.1
C8	C7	C6	H7	120.2	120.1
C6	C7	C8	C9	159.8	180.0
C6	C7	C8	O8	280.5	300.0
C6	C7	C8	H8	42.0	59.9
O7	C7	C6	H7	239.0	240.0
C6	C7	O7	HO7	180.0	300.0
O6	C6	C5	N5	177.0	188.1
O6	C6	C5	H5	296.4	309.1
C5	C6	O6	C7	124.1	120.1
C5	C6	O6	H6	243.0	240.2
C7	C6	O6	H6	118.8	120.1
O6	C6	C7	C8	294.0	300.1
O6	C6	C7	O7	52.8	60.0
O6	C6	C7	H7	173.8	180.0
H6	C6	C5	N5	54.9	68.2
H6	C6	C5	H5	174.3	189.2
C5	C6	H6	C7	237.3	239.9
C5	C6	H6	O6	119.4	119.8
C7	C6	H6	O6	242.1	239.9
H6	C6	C7	C8	56.2	60.2
H6	C6	C7	O7	175.0	180.1
H6	C6	C7	H7	296.0	300.1
C8	C7	C6	O6	294.0	300.1
C8	C7	C6	H6	56.2	60.2
C6	C7	C8	O7	115.8	120.0
C6	C7	C8	H7	237.1	239.9
O7	C7	C8	H7	121.3	119.9
C8	C7	O7	HO7	296.9	60.0
C9	C8	C7	O8	239.2	240.0
C9	C8	C7	H8	117.7	120.1
C7	C8	C9	N9	57.9	179.9
C7	C8	C9	H91	183.2	300.0
C7	C8	C9	H92	292.6	59.9
O8	C8	C7	H8	238.5	240.1
C7	C8	O8	HO8	180.0	300.0
O7	C7	C6	O6	52.8	60.0
O7	C7	C6	H6	175.0	180.1
C6	C7	O7	C8	243.1	240.0
C6	C7	O7	H7	122.8	120.1
C8	C7	O7	H7	239.7	240.1
O7	C7	C8	C9	43.9	60.0
O7	C7	C8	O8	164.7	180.0
O7	C7	C8	H8	286.2	299.9
H7	C7	C6	O6	173.8	180.0
H7	C7	C6	H6	296.0	300.1
C6	C7	H7	C8	119.7	120.1
C6	C7	H7	O7	241.4	240.0
C8	C7	H7	O7	121.6	119.9
H7	C7	C8	C9	282.6	300.1
H7	C7	C8	O8	43.4	60.1
H7	C7	C8	H8	164.9	180.0
H7	C7	O7	HO7	57.2	180.0
C9	C8	C7	O7	43.9	60.0
C9	C8	C7	H7	282.6	300.1
C7	C8	C9	O8	120.0	120.0
C7	C8	C9	H8	241.5	239.9
O8	C8	C9	H8	121.5	119.9
C9	C8	O8	HO8	303.5	60.1
N9	C9	C8	H91	234.7	240.0
N9	C9	C8	H92	125.3	120.1
C8	C9	N9	HN91	180.0	180.0
C8	C9	N9	HN92	54.7	293.8
H91	C9	C8	H92	250.5	240.1
O8	C8	C7	O7	164.7	180.0
O8	C8	C7	H7	43.4	60.1
C7	C8	O8	C9	236.5	239.9
C7	C8	O8	H8	118.6	120.0
C9	C8	O8	H8	242.2	240.1
O8	C8	C9	N9	297.9	59.9
O8	C8	C9	H91	63.2	180.0
O8	C8	C9	H92	172.7	299.9
H8	C8	C7	O7	286.2	299.9
H8	C8	C7	H7	164.9	180.0
C7	C8	H8	C9	122.1	120.1
C7	C8	H8	O8	241.5	240.1
C9	C8	H8	O8	119.3	119.9
H8	C8	C9	N9	176.4	300.1
H8	C8	C9	H91	301.7	60.1
H8	C8	C9	H92	51.2	180.0
H8	C8	O8	HO8	61.3	180.0
N9	C9	C8	O8	297.9	59.9
N9	C9	C8	H8	176.4	300.1
C8	C9	N9	H91	125.2	120.0
C8	C9	N9	H92	234.8	240.0
H91	C9	N9	H92	109.5	119.9
HN91	N9	C9	HN92	125.3	246.2
H91	C9	C8	O8	63.2	180.0
H91	C9	C8	H8	301.7	60.1
C8	C9	H91	N9	233.8	239.9
C8	C9	H91	H92	116.9	119.9
N9	C9	H91	H92	243.0	240.0
H91	C9	N9	HN91	54.7	60.0
H91	C9	N9	HN92	289.5	173.8
H92	C9	C8	O8	172.7	299.9
H92	C9	C8	H8	51.2	180.0
C8	C9	H92	N9	126.2	120.1
C8	C9	H92	H91	243.1	240.1
N9	C9	H92	H91	116.9	120.0
H92	C9	N9	HN91	305.2	300.0
H92	C9	N9	HN92	179.9	53.8
C5	N5	C10	C11	179.0	180.0
N5	C10	C11	O10	179.8	180.0
C11	C10	N5	HN5	359.1	0.1
H111	C11	C10	H112	234.7	240.1
H111	C11	C10	H113	125.3	120.1
H112	C11	C10	H113	250.6	240.0
C10	N5	C5	H5	0.4	30.0
C5	N5	C10	HN5	179.9	179.9
C11	C10	N5	O10	180.2	180.0
N5	C10	C11	H111	180.0	180.1
N5	C10	C11	H112	305.3	300.0
N5	C10	C11	H113	54.7	60.0
C11	C10	O10	N5	179.8	180.0
O10	C10	C11	H111	0.2	0.1
O10	C10	C11	H112	125.4	120.0
O10	C10	C11	H113	234.9	240.0
O10	C10	N5	HN5	178.9	180.1
H111	C11	C10	N5	180.0	180.1
H111	C11	C10	O10	0.2	0.1
C10	C11	H111	H112	125.2	119.9
C10	C11	H111	H113	234.7	239.9
H112	C11	H111	H113	109.5	120.0
H112	C11	C10	N5	305.3	300.0
H112	C11	C10	O10	125.4	120.0
C10	C11	H112	H111	230.0	240.0
C10	C11	H112	H113	115.0	120.0
H111	C11	H112	H113	245.0	240.0
H113	C11	C10	N5	54.7	60.0
H113	C11	C10	O10	234.9	240.0
C10	C11	H113	H111	130.1	120.1
C10	C11	H113	H112	245.0	240.0
H111	C11	H113	H112	115.0	119.9
HN5	N5	C5	H5	180.4	210.0
C5	N5	HN5	C10	180.1	180.1
HN5	N5	C10	O10	178.9	180.1
HO4	O4	C4	H4	58.7	300.7
HO7	O7	C7	H7	57.2	180.0
HO8	O8	C8	H8	61.3	180.0
HN91	N9	C9	H91	54.7	60.0
HN91	N9	C9	H92	305.2	300.0
C9	N9	HN91	HN92	234.8	113.8
HN92	N9	C9	H91	289.5	173.8
HN92	N9	C9	H92	179.9	53.8
C9	N9	HN92	HN91	126.2	246.2