Atom Nomenclature for 99L

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 99L

Atom Name (V3) Atom Name (V2)
C10 C1
C20 C2
C21 C3
C22 C4
C24 C5
C01 C6
C02 C7
N03 N1
C04 C8
C05 C9
C06 C10
C07 C11
C08 C12
C09 C13
C11 C14
C12 C15
O13 O1
C14 C16
S15 S1
O16 O2
O17 O3
N18 N2
C19 C17
C23 C18
O25 O4
H101 H1
H201 H2
H202 H3
H211 H4
H212 H5
H222 H6
H221 H7
H242 H8
H241 H9
H071 H10
H081 H11
H111 H12
H121 H13
H142 H14
H141 H15
H192 H16
H193 H17
H191 H18
H231 H19
H251 H20