PDB Chemical Component 98D

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 98D

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C01 N02 1.483 1.469
N02 C03 1.478 1.469
N02 C36 1.481 1.469
C03 C04 1.547 1.531
C36 C35 1.543 1.530
C23 C24 1.433 1.388
C23 C19 1.457 1.381
C21 C20 1.535 1.530
C04 N05 1.458 1.469
C20 C19 1.463 1.507
C20 O22 1.427 1.428
C24 C25 1.392 1.383
C19 N18 1.342 1.319
C35 N05 1.472 1.470
N05 C06 1.400 1.399
C25 C17 1.421 1.391
N18 C17 1.364 1.324
C06 C07 1.413 1.390
C06 C34 1.414 1.389
C07 C08 1.395 1.380
C17 N16 1.354 1.392
C28 C27 1.447 1.507
C28 C29 1.341 1.310
C34 C33 1.397 1.381
C08 C09 1.397 1.388
N16 N26 1.322 1.398
N16 C15 1.339 1.377
C27 N26 1.411 1.465
N26 C30 1.342 1.350
C33 C09 1.409 1.389
C09 N10 1.374 1.401
N32 C15 1.348 1.324
N32 C11 1.374 1.327
C15 C14 1.387 1.412
N10 C11 1.349 1.380
C30 C14 1.380 1.468
C30 O31 1.254 1.216
C11 N12 1.359 1.328
C14 C13 1.383 1.393
N12 C13 1.366 1.322
C13 H131 1.080 1.080
C20 H201 1.100 1.091
C21 H213 1.100 1.090
C21 H212 1.100 1.091
C21 H211 1.100 1.090
C24 H241 1.080 1.080
C28 H281 1.080 1.080
C01 H012 1.100 1.090
C01 H013 1.100 1.090
C01 H011 1.100 1.090
C03 H031 1.100 1.090
C03 H032 1.100 1.090
C04 H041 1.100 1.090
C04 H042 1.100 1.090
C07 H071 1.080 1.079
C08 H081 1.080 1.080
N10 H101 1.000 0.970
O22 H221 0.950 0.967
C23 H231 1.080 1.080
C25 H251 1.080 1.081
C27 H271 1.100 1.090
C27 H272 1.101 1.090
C29 H291 1.080 1.080
C29 H292 1.080 1.080
C33 H331 1.080 1.080
C34 H341 1.080 1.079
C35 H351 1.100 1.091
C35 H352 1.100 1.090
C36 H361 1.100 1.090
C36 H362 1.100 1.089

Bond Angles for 98D

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C01 N02 C03 115.0 111.0
C01 N02 C36 114.9 111.0
N02 C01 H012 109.5 109.5
N02 C01 H013 109.5 109.6
N02 C01 H011 109.5 109.4
C03 N02 C36 108.4 110.9
N02 C03 C04 108.6 109.4
N02 C03 H031 109.7 109.5
N02 C03 H032 109.7 109.5
N02 C36 C35 107.4 109.4
N02 C36 H361 110.0 109.5
N02 C36 H362 110.0 109.5
C03 C04 N05 117.1 109.3
C04 C03 H031 109.7 109.5
C04 C03 H032 109.7 109.5
C03 C04 H041 107.5 109.5
C03 C04 H042 107.5 109.5
C36 C35 H351 107.5 109.5
C36 C35 H352 107.5 109.6
C23 C24 C25 118.2 118.5
C23 C24 H241 120.9 120.7
C21 C20 C19 108.9 109.5
C21 C20 O22 110.0 109.5
C21 C20 H201 109.0 109.5
C04 N05 C06 119.6 111.0
N05 C04 H041 107.5 109.5
N05 C04 H042 107.6 109.5
C19 C20 O22 108.3 109.5
C20 C19 N18 122.5 119.6
C19 C20 H201 110.0 109.5
O22 C20 H201 110.5 109.4
C20 O22 H221 109.5 114.0
C25 C24 H241 120.9 120.8
C24 C25 H251 120.5 120.5
N05 C06 C07 121.1 120.0
N05 C06 C34 123.9 120.0
C07 C06 C34 114.9 120.0
C06 C07 C08 122.4 119.9
C06 C07 H071 118.8 120.0
C06 C34 C33 123.0 120.0
C06 C34 H341 118.5 120.0
C07 C08 C09 121.7 120.1
C08 C07 H071 118.8 120.1
C07 C08 H081 119.1 120.0
C17 N16 N26 129.8 125.2
C27 C28 C29 126.0 120.0
C28 C27 N26 106.9 109.5
C27 C28 H281 117.0 120.0
C28 C27 H271 110.1 109.5
C28 C27 H272 110.1 109.5
C29 C28 H281 117.0 120.0
C28 C29 H291 120.0 120.0
C28 C29 H292 120.0 120.0
C34 C33 H331 119.6 120.0
C08 C09 N10 125.2 120.0
C09 C08 H081 119.1 120.0
N16 N26 C30 111.1 109.5
C27 N26 C30 119.7 125.3
N26 C30 O31 127.1 126.5
C09 N10 C11 128.1 120.0
C09 N10 H101 116.0 120.0
C11 N10 H101 116.0 120.0
C14 C13 H131 121.8 120.6
N12 C13 H131 121.7 120.7
H213 C21 H212 109.5 109.4
H213 C21 H211 109.5 109.5
H212 C21 H211 109.4 109.4
H012 C01 H013 109.4 109.5
H012 C01 H011 109.5 109.4
H013 C01 H011 109.5 109.5
H031 C03 H032 109.4 109.5
H041 C04 H042 109.5 109.5
H271 C27 H272 109.5 109.4
H291 C29 H292 120.0 120.0
H351 C35 H352 109.5 109.5
H361 C36 H362 109.5 109.5

Torsion Angles for 98D

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C03 N02 C01 C36 233.1 236.1
C01 N02 C03 C04 197.9 183.2
C01 N02 C03 H031 317.8 303.2
C01 N02 C03 H032 78.0 63.2
C01 N02 C36 C35 160.8 176.8
C01 N02 C36 H361 280.5 296.7
C01 N02 C36 H362 41.1 56.8
H012 C01 N02 H013 240.0 240.0
H012 C01 N02 H011 120.0 119.9
H013 C01 N02 H011 240.0 240.0
C01 N02 C03 C36 130.1 123.9
C03 N02 C01 H012 180.0 60.0
C03 N02 C01 H013 300.0 180.0
C03 N02 C01 H011 60.0 300.0
C03 N02 C36 C35 291.0 300.7
C03 N02 C36 H361 50.7 60.6
C03 N02 C36 H362 171.4 180.7
N02 C03 C04 N05 326.4 301.6
C04 C03 N02 H031 240.1 240.0
C04 C03 N02 H032 119.9 120.0
N02 C03 C04 H041 87.5 61.6
N02 C03 C04 H042 205.3 181.6
H031 C03 N02 H032 239.8 239.9
C01 N02 C36 C03 229.8 236.1
C36 N02 C01 H012 306.9 183.8
C36 N02 C01 H013 66.9 303.9
C36 N02 C01 H011 186.9 63.9
C36 N02 C03 C04 67.8 59.3
C36 N02 C03 H031 187.7 179.3
C36 N02 C03 H032 307.9 299.3
N02 C36 C35 H351 157.8 298.4
N02 C36 C35 H352 275.6 178.4
H361 C36 N02 H362 239.4 239.9
C04 C03 N02 C36 67.8 59.3
N02 C03 C04 H031 119.9 120.0
N02 C03 C04 H032 240.1 240.0
C03 C04 N05 C06 185.8 183.2
N05 C04 C03 H041 238.9 240.0
N05 C04 C03 H042 121.1 120.0
H031 C03 C04 H032 120.3 120.0
H041 C04 C03 H042 242.2 240.0
N02 C36 C35 H361 119.7 119.9
N02 C36 C35 H362 240.3 240.0
H351 C35 C36 H352 242.2 120.0
C25 C24 C23 H241 180.0 179.5
C23 C24 C25 H251 174.6 180.0
C19 C23 C24 C25 1.7 359.7
C19 C23 C24 H241 181.7 180.3
C23 C19 C20 H201 358.0 245.0
C19 C20 C21 O22 241.4 240.0
C21 C20 C19 N18 58.5 305.0
C19 C20 C21 H201 120.0 120.0
O22 C20 C21 H201 238.6 240.0
C21 C20 O22 H221 180.0 300.0
N05 C04 C03 H031 206.6 181.6
N05 C04 C03 H032 86.3 61.6
C03 C04 N05 H041 121.1 120.0
C03 C04 N05 H042 238.9 240.0
C04 N05 C06 C07 346.6 180.0
C04 N05 C06 C34 167.7 359.8
H041 C04 N05 H042 117.8 120.1
C21 C20 C19 O22 119.6 120.0
C21 C20 C19 H201 240.5 240.0
O22 C20 C19 H201 120.9 120.0
C19 C20 O22 H221 299.0 60.0
C21 C20 O22 C19 241.0 240.0
C21 C20 O22 H201 120.5 120.0
O22 C20 C19 N18 298.9 185.0
C19 C20 O22 H201 239.4 240.0
C23 C24 C25 H241 180.0 180.5
N18 C19 C20 O22 298.9 185.0
N18 C19 C20 H201 178.0 65.0
N02 C36 C35 N05 36.7 58.3
C35 N05 C04 H041 242.3 299.4
C35 N05 C04 H042 124.5 179.3
C06 N05 C04 H041 64.7 63.2
C06 N05 C04 H042 306.8 303.2
C07 C06 N05 C34 178.9 180.3
N05 C06 C07 C08 179.6 180.0
N05 C06 C07 H071 359.6 0.0
N05 C06 C34 C33 180.2 179.7
N05 C06 C34 H341 0.2 360.0
C25 C17 N16 N26 164.7 179.7
N18 C17 N16 N26 330.6 359.9
N05 C06 C07 C34 181.0 179.7
C07 C06 C34 C33 1.2 359.5
C07 C06 C34 H341 181.2 179.7
C06 C07 C08 C09 2.6 0.1
C08 C07 C06 H071 180.0 180.0
C06 C07 C08 H081 182.6 180.0
N05 C06 C34 C07 179.0 180.3
C34 C06 C07 C08 358.6 0.2
C34 C06 C07 H071 178.6 180.3
C06 C34 C33 H331 177.7 180.3
C08 C07 C06 C34 358.6 0.2
C06 C07 C08 H071 180.0 180.0
C07 C08 C09 N10 180.0 180.0
C09 C08 C07 H081 180.0 180.1
C17 N16 N26 C30 171.0 180.0
C29 C28 C27 H281 180.0 180.1
C27 C28 C29 H291 180.0 359.9
C27 C28 C29 H292 360.0 180.0
C28 C27 N26 C30 92.4 275.1
H271 C27 C28 H272 239.2 240.1
C29 C28 C27 N26 316.3 125.0
C27 C28 C29 H281 180.0 179.9
C29 C28 C27 H271 75.8 245.1
C29 C28 C27 H272 196.7 5.0
H291 C29 C28 H292 180.0 179.9
C06 C34 C33 H341 180.0 180.2
C09 C08 C07 H071 182.6 180.1
C07 C08 C09 H081 180.0 179.9
C08 C09 N10 C11 332.5 33.9
C08 C09 N10 H101 152.5 213.9
C28 C27 N26 N16 276.3 95.0
C27 N26 N16 C30 176.4 180.0
N16 N26 C30 O31 177.3 180.0
N26 C27 C28 C29 316.3 125.0
N26 C27 C28 H281 136.2 304.9
C28 C27 N26 H271 119.6 120.1
C28 C27 N26 H272 240.4 240.0
N16 N26 C27 C30 183.9 179.9
C27 N26 C30 O31 0.6 359.9
C06 C34 C33 C09 357.7 0.5
C33 C09 C08 H081 176.6 180.0
C33 C09 N10 H101 335.9 34.0
N10 C09 C08 H081 360.0 0.1
C11 N10 C09 H101 180.0 180.0
N32 C11 N10 H101 176.4 5.5
C15 C14 C13 H131 180.3 180.0
C09 N10 C11 H101 180.0 180.0
C30 C14 C13 H131 358.2 360.0
C11 N12 C13 H131 179.5 180.0
N12 C13 C14 H131 180.0 180.0
C14 C13 N12 H131 180.0 180.0
C21 C20 H201 C19 119.4 120.0
C21 C20 H201 O22 238.9 240.0
C19 C20 H201 O22 119.5 120.0
H201 C20 C19 N18 178.0 65.0
H201 C20 O22 H221 59.5 180.0
H213 C21 C20 C19 180.0 60.0
H213 C21 C20 O22 298.6 180.0
H213 C21 C20 H201 60.0 300.0
H212 C21 H213 H211 120.0 120.0
H212 C21 C20 C19 300.0 180.0
H212 C21 C20 O22 58.6 300.0
H212 C21 C20 H201 180.0 60.0
H213 C21 H212 H211 240.0 240.0
H211 C21 C20 C19 60.0 300.0
H211 C21 C20 O22 178.5 60.0
H211 C21 C20 H201 299.9 180.0
H213 C21 H211 H212 120.0 120.0
C23 C24 H241 C25 180.0 179.4
H241 C24 C25 H251 354.6 359.5
C27 C28 H281 C29 180.0 180.1
H281 C28 C27 N26 136.2 304.9
H281 C28 C27 H271 255.8 65.0
H281 C28 C27 H272 16.7 184.9
H281 C28 C29 H291 0.0 180.0
H281 C28 C29 H292 180.0 0.1
H012 C01 N02 C03 180.0 60.0
H012 C01 N02 C36 306.9 183.8
N02 C01 H012 H013 120.0 120.1
N02 C01 H012 H011 240.0 240.1
H013 C01 H012 H011 120.0 120.0
H013 C01 N02 C03 300.0 180.0
H013 C01 N02 C36 66.9 303.9
N02 C01 H013 H012 240.0 240.0
N02 C01 H013 H011 120.0 120.0
H012 C01 H013 H011 240.0 240.1
H011 C01 N02 C03 60.0 300.0
H011 C01 N02 C36 186.9 63.9
N02 C01 H011 H012 120.1 120.0
N02 C01 H011 H013 240.0 239.9
H012 C01 H011 H013 120.0 120.0
H031 C03 N02 C36 187.7 179.3
N02 C03 H031 C04 240.8 240.1
N02 C03 H031 H032 120.4 120.1
H031 C03 C04 N05 206.6 181.6
C04 C03 H031 H032 239.6 240.0
H031 C03 C04 H041 327.6 301.6
H031 C03 C04 H042 85.5 61.6
H032 C03 N02 C36 307.9 299.3
N02 C03 H032 C04 119.2 119.9
N02 C03 H032 H031 239.6 239.9
H032 C03 C04 N05 86.3 61.6
C04 C03 H032 H031 120.4 120.0
H032 C03 C04 H041 207.4 181.6
H032 C03 C04 H042 325.2 301.6
C03 C04 H041 N05 233.1 240.1
H041 C04 C03 H031 327.6 301.6
H041 C04 C03 H032 207.4 181.6
C03 C04 H041 H042 116.5 120.0
H041 C04 N05 C06 64.7 63.2
N05 C04 H041 H042 243.4 239.9
C03 C04 H042 N05 126.9 119.9
H042 C04 C03 H031 85.5 61.6
H042 C04 C03 H032 325.2 301.6
C03 C04 H042 H041 243.5 240.0
H042 C04 N05 C06 306.8 303.2
N05 C04 H042 H041 116.6 120.1
H071 C07 C06 C34 178.6 180.3
C06 C07 H071 C08 180.0 180.0
H071 C07 C08 C09 182.6 180.1
H071 C07 C08 H081 2.6 360.0
C07 C08 H081 C09 180.0 180.1
H081 C08 C07 H071 2.6 360.0
H081 C08 C09 N10 360.0 0.1
C09 N10 H101 C11 180.0 180.0
H221 O22 C20 H201 59.5 180.0
H231 C23 C24 C25 181.7 180.0
H231 C23 C24 H241 1.7 0.5
H251 C25 C24 H241 354.6 359.5
H271 C27 C28 C29 75.8 245.1
C28 C27 H271 N26 242.4 240.0
H271 C27 C28 H281 255.8 65.0
C28 C27 H271 H272 121.2 120.0
H271 C27 N26 C30 332.8 155.0
H272 C27 C28 C29 196.7 5.0
C28 C27 H272 N26 117.6 120.0
H272 C27 C28 H281 16.7 184.9
C28 C27 H272 H271 238.8 240.0
H272 C27 N26 C30 212.0 35.0
H291 C29 C28 H281 0.0 180.0
C28 C29 H291 H292 180.0 180.1
H292 C29 C28 H281 180.0 0.1
C28 C29 H292 H291 180.0 179.9
C06 C34 H341 C33 180.0 179.8
H341 C34 C33 H331 357.7 0.1
C36 C35 H351 H352 116.5 239.9
C36 C35 H352 H351 243.5 120.0
N02 C36 H361 C35 241.9 240.2
N02 C36 H361 H362 121.0 120.1
H361 C36 C35 H351 38.1 178.5
H361 C36 C35 H352 155.9 58.5
N02 C36 H362 C35 118.1 119.9
N02 C36 H362 H361 239.0 239.9
H362 C36 C35 H351 277.4 58.4
H362 C36 C35 H352 35.2 298.4