Atom Nomenclature for 982

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 982

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
N1 N1
C5 C5
C6 C6
S10 S10
C11 C11
C12 C12
C13 C13
O14 O14
O15 O15
C16 C16
C17 C17
O20 O20
O21 O21
O22 O22
HC1 HC1
HC2 HC2
HC3 HC3
H161 1H16
H162 2H16
H21 H21
H22 H22