PDB Chemical Component 980
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 980
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.492 |
1.507 |
| C1 |
H1 |
1.100 |
1.090 |
| C1 |
H1A |
1.100 |
1.090 |
| C1 |
H1B |
1.100 |
1.091 |
| C2 |
C3 |
1.427 |
1.324 |
| C2 |
C6 |
1.476 |
1.404 |
| C24 |
C3 |
1.525 |
1.507 |
| C3 |
S4 |
1.715 |
1.756 |
| C5 |
S4 |
1.730 |
1.757 |
| C6 |
C5 |
1.402 |
1.398 |
| C5 |
C10 |
1.423 |
1.406 |
| N7 |
C6 |
1.382 |
1.352 |
| N7 |
C8 |
1.352 |
1.317 |
| C17 |
C8 |
1.532 |
1.482 |
| C8 |
N9 |
1.355 |
1.330 |
| N9 |
C10 |
1.355 |
1.325 |
| C10 |
N11 |
1.444 |
1.386 |
| C12 |
N11 |
1.389 |
1.470 |
| N11 |
C16 |
1.403 |
1.469 |
| C12 |
C13 |
1.492 |
1.531 |
| C12 |
H12 |
1.100 |
1.091 |
| C12 |
H12A |
1.100 |
1.090 |
| C13 |
O14 |
1.411 |
1.430 |
| C13 |
H13 |
1.099 |
1.090 |
| C13 |
H13A |
1.100 |
1.090 |
| O14 |
C15 |
1.387 |
1.430 |
| C16 |
C15 |
1.492 |
1.532 |
| C15 |
H15 |
1.100 |
1.091 |
| C15 |
H15A |
1.100 |
1.090 |
| C16 |
H16 |
1.100 |
1.090 |
| C16 |
H16A |
1.100 |
1.090 |
| C22 |
C17 |
1.396 |
1.398 |
| C17 |
C18 |
1.403 |
1.398 |
| N19 |
C18 |
1.346 |
1.320 |
| C18 |
H18 |
1.080 |
1.080 |
| C20 |
N19 |
1.339 |
1.326 |
| N21 |
C20 |
1.340 |
1.325 |
| N23 |
C20 |
1.433 |
1.382 |
| N21 |
C22 |
1.352 |
1.321 |
| C22 |
H22 |
1.080 |
1.080 |
| N23 |
HN23 |
1.000 |
0.970 |
| N23 |
HN2A |
1.000 |
0.970 |
| N25 |
C24 |
1.278 |
1.469 |
| C24 |
H24 |
1.101 |
1.089 |
| C24 |
H24A |
1.100 |
1.091 |
| C30 |
N25 |
1.362 |
1.470 |
| C26 |
N25 |
1.362 |
1.469 |
| C27 |
C26 |
1.505 |
1.532 |
| C26 |
H26 |
1.100 |
1.090 |
| C26 |
H26A |
1.100 |
1.090 |
| N28 |
C27 |
1.341 |
1.471 |
| C27 |
H27 |
1.100 |
1.090 |
| C27 |
H27A |
1.100 |
1.090 |
| C31 |
N28 |
1.446 |
1.348 |
| N28 |
C29 |
1.331 |
1.471 |
| C29 |
C30 |
1.508 |
1.532 |
| C29 |
H29 |
1.100 |
1.090 |
| C29 |
H29A |
1.101 |
1.090 |
| C30 |
H30 |
1.100 |
1.090 |
| C30 |
H30A |
1.100 |
1.090 |
| O32 |
C31 |
1.222 |
1.213 |
| C33 |
C31 |
1.514 |
1.507 |
| O36 |
C33 |
1.380 |
1.429 |
| C35 |
C33 |
1.503 |
1.530 |
| C33 |
H33 |
1.100 |
1.089 |
| C35 |
H35 |
1.100 |
1.090 |
| C35 |
H35A |
1.100 |
1.090 |
| C35 |
H35B |
1.100 |
1.090 |
| O36 |
HO36 |
0.950 |
0.967 |
Bond Angles for 980
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
H1 |
109.5 |
109.5 |
| C2 |
C1 |
H1A |
109.5 |
109.5 |
| C2 |
C1 |
H1B |
109.5 |
109.5 |
| C1 |
C2 |
C3 |
124.5 |
122.1 |
| C1 |
C2 |
C6 |
121.8 |
122.1 |
| H1 |
C1 |
H1A |
109.4 |
109.5 |
| H1 |
C1 |
H1B |
109.5 |
109.4 |
| H1A |
C1 |
H1B |
109.5 |
109.5 |
| C3 |
C2 |
C6 |
113.7 |
115.8 |
| C2 |
C3 |
S4 |
106.4 |
110.7 |
| C2 |
C6 |
C5 |
114.0 |
112.5 |
| C6 |
C5 |
C10 |
117.5 |
118.9 |
| C5 |
C10 |
N9 |
119.6 |
119.0 |
| C5 |
C10 |
N11 |
121.9 |
120.5 |
| N7 |
C8 |
N9 |
119.1 |
122.3 |
| C8 |
N9 |
C10 |
122.4 |
120.7 |
| N9 |
C10 |
N11 |
118.4 |
120.5 |
| C10 |
N11 |
C16 |
122.3 |
111.0 |
| C12 |
N11 |
C16 |
112.6 |
110.8 |
| N11 |
C16 |
C15 |
111.6 |
109.2 |
| N11 |
C16 |
H16 |
108.7 |
109.5 |
| N11 |
C16 |
H16A |
108.8 |
109.5 |
| C13 |
C12 |
H12 |
109.9 |
109.5 |
| C13 |
C12 |
H12A |
109.9 |
109.5 |
| C12 |
C13 |
O14 |
114.3 |
109.2 |
| C12 |
C13 |
H13 |
107.9 |
109.5 |
| C12 |
C13 |
H13A |
107.9 |
109.5 |
| H12 |
C12 |
H12A |
109.0 |
109.6 |
| O14 |
C13 |
H13 |
107.9 |
109.6 |
| O14 |
C13 |
H13A |
107.9 |
109.5 |
| C13 |
O14 |
C15 |
111.8 |
113.7 |
| H13 |
C13 |
H13A |
111.1 |
109.6 |
| O14 |
C15 |
H15 |
108.8 |
109.5 |
| O14 |
C15 |
H15A |
108.8 |
109.5 |
| C16 |
C15 |
H15 |
108.8 |
109.5 |
| C16 |
C15 |
H15A |
108.8 |
109.6 |
| H15 |
C15 |
H15A |
110.1 |
109.5 |
| H16 |
C16 |
H16A |
110.2 |
109.6 |
| C17 |
C18 |
H18 |
119.9 |
120.4 |
| N19 |
C18 |
H18 |
120.0 |
120.5 |
| N21 |
C22 |
H22 |
120.8 |
120.5 |
| HN23 |
N23 |
HN2A |
109.4 |
120.0 |
| N25 |
C24 |
H24 |
107.9 |
109.5 |
| N25 |
C24 |
H24A |
107.9 |
109.4 |
| H24 |
C24 |
H24A |
111.0 |
109.5 |
| C27 |
C26 |
H26 |
108.9 |
109.5 |
| C27 |
C26 |
H26A |
108.9 |
109.5 |
| H26 |
C26 |
H26A |
110.1 |
109.4 |
| N28 |
C27 |
H27 |
107.5 |
109.6 |
| N28 |
C27 |
H27A |
107.5 |
109.8 |
| H27 |
C27 |
H27A |
111.4 |
109.7 |
| N28 |
C29 |
C30 |
114.7 |
108.6 |
| N28 |
C29 |
H29 |
107.8 |
109.6 |
| N28 |
C29 |
H29A |
107.7 |
109.6 |
| C30 |
C29 |
H29 |
107.8 |
109.6 |
| C30 |
C29 |
H29A |
107.8 |
109.6 |
| C29 |
C30 |
H30 |
109.5 |
109.6 |
| C29 |
C30 |
H30A |
109.5 |
109.5 |
| H29 |
C29 |
H29A |
111.1 |
109.8 |
| H30 |
C30 |
H30A |
109.4 |
109.5 |
| O36 |
C33 |
H33 |
109.8 |
109.5 |
| C35 |
C33 |
H33 |
107.3 |
109.5 |
| H35 |
C35 |
H35A |
109.5 |
109.5 |
| H35 |
C35 |
H35B |
109.5 |
109.5 |
| H35A |
C35 |
H35B |
109.5 |
109.4 |
Torsion Angles for 980
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H1 |
C1 |
C2 |
H1A |
240.0 |
240.0 |
| H1 |
C1 |
C2 |
H1B |
120.0 |
120.0 |
| H1A |
C1 |
C2 |
H1B |
240.0 |
240.0 |
| C3 |
C2 |
C1 |
C6 |
179.0 |
180.3 |
| C1 |
C2 |
C3 |
S4 |
180.8 |
180.0 |
| C1 |
C2 |
C6 |
C5 |
179.3 |
179.8 |
| C2 |
C1 |
H1 |
H1A |
120.0 |
120.0 |
| C2 |
C1 |
H1 |
H1B |
240.0 |
240.0 |
| H1 |
C1 |
C2 |
C3 |
89.5 |
90.0 |
| H1 |
C1 |
C2 |
C6 |
270.5 |
269.7 |
| H1A |
C1 |
H1 |
H1B |
120.0 |
120.0 |
| C2 |
C1 |
H1A |
H1 |
240.0 |
240.0 |
| C2 |
C1 |
H1A |
H1B |
120.0 |
120.0 |
| H1A |
C1 |
C2 |
C3 |
209.5 |
210.0 |
| H1A |
C1 |
C2 |
C6 |
30.4 |
29.7 |
| H1 |
C1 |
H1A |
H1B |
240.0 |
240.0 |
| C2 |
C1 |
H1B |
H1 |
120.0 |
120.0 |
| C2 |
C1 |
H1B |
H1A |
240.0 |
240.0 |
| H1B |
C1 |
C2 |
C3 |
329.5 |
330.0 |
| H1B |
C1 |
C2 |
C6 |
150.5 |
149.7 |
| H1 |
C1 |
H1B |
H1A |
119.9 |
120.0 |
| C3 |
C2 |
C1 |
H1 |
89.5 |
90.0 |
| C3 |
C2 |
C1 |
H1A |
209.5 |
210.0 |
| C3 |
C2 |
C1 |
H1B |
329.5 |
330.0 |
| C1 |
C2 |
C3 |
C6 |
180.9 |
179.7 |
| C3 |
C2 |
C6 |
C5 |
0.2 |
359.5 |
| C6 |
C2 |
C1 |
H1 |
270.5 |
269.7 |
| C6 |
C2 |
C1 |
H1A |
30.4 |
29.7 |
| C6 |
C2 |
C1 |
H1B |
150.5 |
149.7 |
| C1 |
C2 |
C6 |
C3 |
179.1 |
180.3 |
| C6 |
C2 |
C3 |
S4 |
359.9 |
0.3 |
| C2 |
C6 |
C5 |
C10 |
179.4 |
180.3 |
| S4 |
C3 |
C2 |
C6 |
359.9 |
0.3 |
| C2 |
C6 |
C5 |
S4 |
359.9 |
0.5 |
| C6 |
C5 |
C10 |
N9 |
0.4 |
359.4 |
| C6 |
C5 |
C10 |
N11 |
179.6 |
180.3 |
| C8 |
N9 |
C10 |
C5 |
359.3 |
0.8 |
| N9 |
C10 |
C5 |
N11 |
180.7 |
179.1 |
| C5 |
C10 |
N11 |
C16 |
199.3 |
180.0 |
| N7 |
C6 |
C5 |
C10 |
359.3 |
0.0 |
| N7 |
C8 |
N9 |
C10 |
1.4 |
359.4 |
| C5 |
C10 |
N9 |
C8 |
359.3 |
0.8 |
| C8 |
N9 |
C10 |
N11 |
180.0 |
179.9 |
| C5 |
C10 |
N9 |
N11 |
179.3 |
180.9 |
| N9 |
C10 |
N11 |
C16 |
18.6 |
0.9 |
| C5 |
C10 |
N11 |
N9 |
180.7 |
179.1 |
| C12 |
N11 |
C10 |
C16 |
215.4 |
236.3 |
| C10 |
N11 |
C16 |
C15 |
156.9 |
177.6 |
| C10 |
N11 |
C16 |
H16 |
276.9 |
297.5 |
| C10 |
N11 |
C16 |
H16A |
36.9 |
57.7 |
| C10 |
N11 |
C12 |
C16 |
148.0 |
123.8 |
| C12 |
N11 |
C16 |
C15 |
302.6 |
301.4 |
| C12 |
N11 |
C16 |
H16 |
62.6 |
61.2 |
| C12 |
N11 |
C16 |
H16A |
182.6 |
181.5 |
| N11 |
C16 |
C15 |
H15 |
293.3 |
296.9 |
| N11 |
C16 |
C15 |
H15A |
173.3 |
176.8 |
| H16 |
C16 |
N11 |
H16A |
240.0 |
239.8 |
| C13 |
C12 |
N11 |
C16 |
56.1 |
58.7 |
| H12 |
C12 |
C13 |
H12A |
120.0 |
120.2 |
| O14 |
C13 |
C12 |
H13 |
240.0 |
240.0 |
| O14 |
C13 |
C12 |
H13A |
120.0 |
119.9 |
| C12 |
C13 |
O14 |
C15 |
52.7 |
58.7 |
| H13 |
C13 |
C12 |
H13A |
240.0 |
239.9 |
| H12 |
C12 |
N11 |
C16 |
176.1 |
178.5 |
| C13 |
C12 |
H12 |
H12A |
239.5 |
239.9 |
| H12 |
C12 |
C13 |
O14 |
185.8 |
183.2 |
| H12 |
C12 |
C13 |
H13 |
305.8 |
303.2 |
| H12 |
C12 |
C13 |
H13A |
65.8 |
63.3 |
| H12A |
C12 |
N11 |
C16 |
296.1 |
298.7 |
| C13 |
C12 |
H12A |
H12 |
120.5 |
120.1 |
| H12A |
C12 |
C13 |
O14 |
65.8 |
63.1 |
| H12A |
C12 |
C13 |
H13 |
185.8 |
183.0 |
| H12A |
C12 |
C13 |
H13A |
305.9 |
303.2 |
| O14 |
C13 |
C12 |
H12 |
185.8 |
183.2 |
| O14 |
C13 |
C12 |
H12A |
65.8 |
63.1 |
| C12 |
C13 |
O14 |
H13 |
120.0 |
120.0 |
| C12 |
C13 |
O14 |
H13A |
240.0 |
240.1 |
| H13 |
C13 |
O14 |
H13A |
120.0 |
120.2 |
| C13 |
O14 |
C15 |
H15 |
69.4 |
61.2 |
| C13 |
O14 |
C15 |
H15A |
189.4 |
181.3 |
| H13 |
C13 |
C12 |
H12 |
305.8 |
303.2 |
| H13 |
C13 |
C12 |
H12A |
185.8 |
183.0 |
| C12 |
C13 |
H13 |
O14 |
236.0 |
240.2 |
| C12 |
C13 |
H13 |
H13A |
118.0 |
120.1 |
| O14 |
C13 |
H13 |
H13A |
242.0 |
239.9 |
| H13 |
C13 |
O14 |
C15 |
292.7 |
298.8 |
| H13A |
C13 |
C12 |
H12 |
65.8 |
63.3 |
| H13A |
C13 |
C12 |
H12A |
305.9 |
303.2 |
| C12 |
C13 |
H13A |
O14 |
124.0 |
119.7 |
| C12 |
C13 |
H13A |
H13 |
242.0 |
239.9 |
| O14 |
C13 |
H13A |
H13 |
118.0 |
120.2 |
| H13A |
C13 |
O14 |
C15 |
172.7 |
178.6 |
| N11 |
C16 |
C15 |
O14 |
53.3 |
56.8 |
| C15 |
O14 |
C13 |
H13 |
292.7 |
298.8 |
| C15 |
O14 |
C13 |
H13A |
172.7 |
178.6 |
| C16 |
C15 |
O14 |
H15 |
240.0 |
240.1 |
| C16 |
C15 |
O14 |
H15A |
120.0 |
120.0 |
| H15 |
C15 |
O14 |
H15A |
240.0 |
239.9 |
| N11 |
C16 |
C15 |
H16 |
120.0 |
119.9 |
| N11 |
C16 |
C15 |
H16A |
240.0 |
240.1 |
| O14 |
C15 |
C16 |
H15 |
120.0 |
119.9 |
| O14 |
C15 |
C16 |
H15A |
240.0 |
240.0 |
| H15 |
C15 |
C16 |
H15A |
120.0 |
120.1 |
| O14 |
C15 |
H15 |
H15A |
119.2 |
120.1 |
| C16 |
C15 |
H15 |
H15A |
240.8 |
239.9 |
| O14 |
C15 |
H15A |
H15 |
240.8 |
239.9 |
| C16 |
C15 |
H15A |
H15 |
119.2 |
120.1 |
| N11 |
C16 |
H16 |
C15 |
238.2 |
240.3 |
| N11 |
C16 |
H16 |
H16A |
119.1 |
120.2 |
| H16 |
C16 |
C15 |
H15 |
173.3 |
177.0 |
| H16 |
C16 |
C15 |
H15A |
53.3 |
56.9 |
| N11 |
C16 |
H16A |
C15 |
121.8 |
119.8 |
| N11 |
C16 |
H16A |
H16 |
240.9 |
239.8 |
| H16A |
C16 |
C15 |
H15 |
53.3 |
56.9 |
| H16A |
C16 |
C15 |
H15A |
293.3 |
296.8 |
| C22 |
C17 |
C18 |
H18 |
180.2 |
180.3 |
| N19 |
C18 |
C17 |
H18 |
180.0 |
180.0 |
| C17 |
C18 |
N19 |
H18 |
180.0 |
180.0 |
| C20 |
N19 |
C18 |
H18 |
179.9 |
180.0 |
| H24 |
C24 |
N25 |
H24A |
120.0 |
120.0 |
| N25 |
C24 |
H24 |
H24A |
242.0 |
240.0 |
| N25 |
C24 |
H24A |
H24 |
118.0 |
120.0 |
| C30 |
N25 |
C24 |
H24 |
290.3 |
305.7 |
| C30 |
N25 |
C24 |
H24A |
170.2 |
185.7 |
| C26 |
N25 |
C24 |
H24 |
49.9 |
69.9 |
| C26 |
N25 |
C24 |
H24A |
289.9 |
309.9 |
| H26 |
C26 |
C27 |
H26A |
120.0 |
120.0 |
| C27 |
C26 |
H26 |
H26A |
240.7 |
239.9 |
| C27 |
C26 |
H26A |
H26 |
119.3 |
120.1 |
| N28 |
C27 |
C26 |
H26 |
285.4 |
293.8 |
| N28 |
C27 |
C26 |
H26A |
165.4 |
173.8 |
| H27 |
C27 |
N28 |
H27A |
120.0 |
120.5 |
| H27 |
C27 |
C26 |
H26 |
45.4 |
53.5 |
| H27 |
C27 |
C26 |
H26A |
285.4 |
293.5 |
| N28 |
C27 |
H27 |
H27A |
242.5 |
239.4 |
| H27A |
C27 |
C26 |
H26 |
165.4 |
174.0 |
| H27A |
C27 |
C26 |
H26A |
45.4 |
53.9 |
| N28 |
C27 |
H27A |
H27 |
117.5 |
120.5 |
| C31 |
N28 |
C27 |
H27 |
28.7 |
9.1 |
| C31 |
N28 |
C27 |
H27A |
268.7 |
248.6 |
| C31 |
N28 |
C29 |
H29 |
334.8 |
351.0 |
| C31 |
N28 |
C29 |
H29A |
94.8 |
111.5 |
| C29 |
N28 |
C27 |
H27 |
206.9 |
189.1 |
| C29 |
N28 |
C27 |
H27A |
86.9 |
68.6 |
| C30 |
C29 |
N28 |
H29 |
240.0 |
240.3 |
| C30 |
C29 |
N28 |
H29A |
120.0 |
119.7 |
| N28 |
C29 |
C30 |
H30 |
187.4 |
186.2 |
| N28 |
C29 |
C30 |
H30A |
67.5 |
66.1 |
| H29 |
C29 |
N28 |
H29A |
240.0 |
239.5 |
| N28 |
C29 |
C30 |
H29 |
120.0 |
119.7 |
| N28 |
C29 |
C30 |
H29A |
240.0 |
240.3 |
| H29 |
C29 |
C30 |
H29A |
120.0 |
120.5 |
| H30 |
C30 |
C29 |
H30A |
120.0 |
120.1 |
| N28 |
C29 |
H29 |
C30 |
235.7 |
240.9 |
| N28 |
C29 |
H29 |
H29A |
117.8 |
120.4 |
| C30 |
C29 |
H29 |
H29A |
242.1 |
239.5 |
| H29 |
C29 |
C30 |
H30 |
67.4 |
66.5 |
| H29 |
C29 |
C30 |
H30A |
307.4 |
306.4 |
| N28 |
C29 |
H29A |
C30 |
124.3 |
119.1 |
| N28 |
C29 |
H29A |
H29 |
242.1 |
239.5 |
| C30 |
C29 |
H29A |
H29 |
117.9 |
120.5 |
| H29A |
C29 |
C30 |
H30 |
307.4 |
305.9 |
| H29A |
C29 |
C30 |
H30A |
187.4 |
185.8 |
| H30 |
C30 |
C29 |
H29 |
67.4 |
66.5 |
| H30 |
C30 |
C29 |
H29A |
307.4 |
305.9 |
| C29 |
C30 |
H30 |
H30A |
240.0 |
239.9 |
| H30A |
C30 |
C29 |
H29 |
307.4 |
306.4 |
| H30A |
C30 |
C29 |
H29A |
187.4 |
185.8 |
| C29 |
C30 |
H30A |
H30 |
120.0 |
120.1 |
| C35 |
C33 |
O36 |
H33 |
117.6 |
120.0 |
| O36 |
C33 |
C35 |
H33 |
240.8 |
240.0 |
| H35 |
C35 |
C33 |
H33 |
63.6 |
180.0 |
| H35A |
C35 |
H35 |
H35B |
120.0 |
120.0 |
| H35A |
C35 |
C33 |
H33 |
183.7 |
300.0 |
| H35 |
C35 |
H35A |
H35B |
240.0 |
240.0 |
| H35B |
C35 |
C33 |
H33 |
303.7 |
60.0 |
| H35 |
C35 |
H35B |
H35A |
120.0 |
120.0 |
| HO36 |
O36 |
C33 |
H33 |
296.5 |
300.0 |