Atom Nomenclature for 980

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 980

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
S4 S4
C5 C5
C6 C6
N7 N7
C8 C8
N9 N9
C10 C10
N11 N11
C12 C12
C13 C13
O14 O14
C15 C15
C16 C16
C17 C17
C18 C18
N19 N19
C20 C20
N21 N21
C22 C22
N23 N23
C24 C24
N25 N25
C26 C26
C27 C27
N28 N28
C29 C29
C30 C30
C31 C31
O32 O32
C33 C33
C35 C35
O36 O36
H1 H1
H1A H1A
H1B H1B
H12 H12
H12A H12A
H13 H13
H13A H13A
H15 H15
H15A H15A
H16 H16
H16A H16A
H18 H18
H22 H22
HN23 HN23
HN2A HN2A
H24 H24
H24A H24A
H26 H26
H26A H26A
H27 H27
H27A H27A
H29 H29
H29A H29A
H30 H30
H30A H30A
H33 H33
H35 H35
H35A H35A
H35B H35B
HO36 HO36