PDB Chemical Component 98
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 98
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C9 |
C10 |
1.410 |
1.383 |
| C9 |
C8 |
1.384 |
1.383 |
| C3 |
C4 |
1.522 |
1.506 |
| C3 |
C2 |
1.520 |
1.529 |
| C10 |
C5 |
1.369 |
1.385 |
| C8 |
C7 |
1.382 |
1.383 |
| C4 |
O |
1.233 |
1.213 |
| C4 |
N1 |
1.338 |
1.351 |
| C5 |
N1 |
1.312 |
1.400 |
| C5 |
C6 |
1.387 |
1.396 |
| C7 |
C6 |
1.374 |
1.384 |
| C6 |
N2 |
1.330 |
1.399 |
| C2 |
N2 |
1.476 |
1.464 |
| C2 |
C1 |
1.525 |
1.530 |
| C1 |
H1 |
1.100 |
1.089 |
| C1 |
H2 |
1.100 |
1.090 |
| C1 |
H3 |
1.100 |
1.090 |
| C2 |
H4 |
1.100 |
1.090 |
| C3 |
H5 |
1.100 |
1.090 |
| C3 |
H6 |
1.100 |
1.090 |
| N1 |
H7 |
1.000 |
0.970 |
| C10 |
H8 |
1.080 |
1.080 |
| C9 |
H9 |
1.080 |
1.079 |
| C8 |
H10 |
1.080 |
1.079 |
| C7 |
H11 |
1.080 |
1.080 |
| N2 |
H12 |
1.000 |
0.971 |
Bond Angles for 98
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C9 |
C10 |
H8 |
121.4 |
120.1 |
| C9 |
C8 |
C7 |
123.3 |
120.2 |
| C8 |
C9 |
H9 |
120.5 |
119.9 |
| C9 |
C8 |
H10 |
118.3 |
119.9 |
| C3 |
C4 |
O |
118.6 |
119.8 |
| C3 |
C4 |
N1 |
122.5 |
120.4 |
| C4 |
C3 |
H5 |
109.9 |
109.4 |
| C4 |
C3 |
H6 |
109.9 |
109.4 |
| C3 |
C2 |
N2 |
108.7 |
109.9 |
| C3 |
C2 |
H4 |
108.2 |
109.3 |
| C10 |
C5 |
C6 |
123.1 |
119.8 |
| C8 |
C7 |
C6 |
117.3 |
119.9 |
| C7 |
C8 |
H10 |
118.4 |
119.9 |
| C8 |
C7 |
H11 |
121.3 |
120.1 |
| O |
C4 |
N1 |
118.9 |
119.8 |
| C4 |
N1 |
H7 |
118.7 |
119.8 |
| C5 |
N1 |
H7 |
118.7 |
119.8 |
| C5 |
C6 |
C7 |
120.1 |
119.9 |
| C5 |
C6 |
N2 |
125.5 |
119.4 |
| C7 |
C6 |
N2 |
114.4 |
120.7 |
| C6 |
C7 |
H11 |
121.3 |
120.1 |
| C2 |
N2 |
C6 |
127.5 |
118.8 |
| C6 |
N2 |
H12 |
104.8 |
120.6 |
| N2 |
C2 |
H4 |
108.7 |
109.4 |
| C2 |
N2 |
H12 |
104.8 |
120.6 |
| C2 |
C1 |
H1 |
109.5 |
109.5 |
| C2 |
C1 |
H2 |
109.5 |
109.5 |
| C2 |
C1 |
H3 |
109.5 |
109.5 |
| H1 |
C1 |
H2 |
109.4 |
109.5 |
| H1 |
C1 |
H3 |
109.5 |
109.4 |
| H2 |
C1 |
H3 |
109.5 |
109.4 |
| H5 |
C3 |
H6 |
109.5 |
109.2 |
Torsion Angles for 98
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C9 |
C10 |
C5 |
C6 |
358.7 |
359.0 |
| C8 |
C9 |
C10 |
H8 |
180.6 |
179.9 |
| C9 |
C8 |
C7 |
C6 |
358.2 |
0.1 |
| C7 |
C8 |
C9 |
H10 |
180.0 |
179.9 |
| C9 |
C8 |
C7 |
H11 |
178.2 |
180.1 |
| C4 |
C3 |
C2 |
N2 |
59.4 |
316.3 |
| C4 |
C3 |
C2 |
H4 |
177.2 |
76.4 |
| O |
C4 |
C3 |
N1 |
177.5 |
180.1 |
| C3 |
C4 |
N1 |
H7 |
183.5 |
175.5 |
| H5 |
C3 |
C4 |
H6 |
239.4 |
119.6 |
| C3 |
C2 |
N2 |
C6 |
12.6 |
317.4 |
| N2 |
C2 |
C3 |
H4 |
242.1 |
239.9 |
| C3 |
C2 |
N2 |
H12 |
250.3 |
137.5 |
| C3 |
C2 |
C1 |
H1 |
180.0 |
180.4 |
| C3 |
C2 |
C1 |
H2 |
300.0 |
300.5 |
| C3 |
C2 |
C1 |
H3 |
60.0 |
60.4 |
| C10 |
C5 |
N1 |
H7 |
40.1 |
310.8 |
| C10 |
C5 |
C6 |
C7 |
0.4 |
1.6 |
| C10 |
C5 |
C6 |
N2 |
182.1 |
183.1 |
| C7 |
C8 |
C9 |
H9 |
181.0 |
180.5 |
| C9 |
C8 |
C7 |
H10 |
180.0 |
180.1 |
| C5 |
C6 |
C7 |
C8 |
1.1 |
358.9 |
| C8 |
C7 |
C6 |
N2 |
179.6 |
177.3 |
| C6 |
C7 |
C8 |
H11 |
180.0 |
180.0 |
| C3 |
C4 |
O |
N1 |
182.4 |
179.9 |
| O |
C4 |
C3 |
H5 |
221.5 |
135.4 |
| O |
C4 |
C3 |
H6 |
342.1 |
15.8 |
| O |
C4 |
N1 |
H7 |
6.0 |
355.4 |
| C3 |
C4 |
N1 |
O |
177.4 |
180.1 |
| N1 |
C4 |
C3 |
H5 |
44.0 |
315.3 |
| N1 |
C4 |
C3 |
H6 |
164.6 |
195.8 |
| C5 |
N1 |
C4 |
H7 |
180.0 |
179.9 |
| C4 |
N1 |
C5 |
H7 |
180.0 |
180.1 |
| C8 |
C7 |
C6 |
C5 |
1.1 |
358.9 |
| C6 |
C5 |
N1 |
H7 |
222.5 |
130.7 |
| C7 |
C6 |
C5 |
N2 |
178.4 |
178.4 |
| C5 |
C6 |
C7 |
H11 |
181.1 |
178.9 |
| C2 |
N2 |
C6 |
C5 |
307.2 |
71.8 |
| C5 |
C6 |
N2 |
H12 |
69.6 |
251.7 |
| C6 |
C7 |
C8 |
H10 |
178.2 |
180.0 |
| C8 |
C7 |
C6 |
H11 |
180.0 |
180.0 |
| C5 |
C6 |
C7 |
N2 |
181.5 |
181.6 |
| C2 |
N2 |
C6 |
C7 |
128.8 |
253.3 |
| C7 |
C6 |
N2 |
H12 |
251.2 |
73.3 |
| C5 |
C6 |
N2 |
C7 |
178.5 |
178.4 |
| N2 |
C6 |
C7 |
H11 |
359.6 |
357.3 |
| C6 |
N2 |
C2 |
H4 |
255.1 |
197.4 |
| C2 |
N2 |
C6 |
H12 |
237.6 |
180.0 |
| C3 |
C2 |
N2 |
H4 |
117.5 |
120.1 |
| C5 |
C6 |
N2 |
C2 |
307.2 |
71.8 |
| C7 |
C6 |
N2 |
C2 |
128.8 |
253.3 |
| C6 |
N2 |
C2 |
H12 |
122.4 |
180.0 |
| N2 |
C2 |
C1 |
H1 |
58.3 |
60.0 |
| N2 |
C2 |
C1 |
H2 |
178.3 |
180.0 |
| N2 |
C2 |
C1 |
H3 |
298.3 |
300.0 |
| H1 |
C1 |
C2 |
H2 |
240.0 |
239.9 |
| H1 |
C1 |
C2 |
H3 |
120.0 |
120.0 |
| H2 |
C1 |
C2 |
H3 |
240.0 |
240.0 |
| C2 |
C1 |
H1 |
H2 |
120.0 |
120.1 |
| C2 |
C1 |
H1 |
H3 |
240.0 |
240.0 |
| H2 |
C1 |
H1 |
H3 |
120.0 |
119.9 |
| C2 |
C1 |
H2 |
H1 |
240.0 |
239.9 |
| C2 |
C1 |
H2 |
H3 |
120.0 |
120.0 |
| H1 |
C1 |
H2 |
H3 |
240.0 |
240.1 |
| C2 |
C1 |
H3 |
H1 |
120.1 |
120.0 |
| C2 |
C1 |
H3 |
H2 |
240.0 |
240.0 |
| H1 |
C1 |
H3 |
H2 |
120.0 |
120.0 |
| C3 |
C2 |
H4 |
N2 |
242.2 |
239.6 |
| H4 |
C2 |
N2 |
C6 |
255.1 |
197.4 |
| H4 |
C2 |
N2 |
H12 |
132.7 |
17.4 |
| H4 |
C2 |
C1 |
H1 |
299.4 |
300.2 |
| H4 |
C2 |
C1 |
H2 |
59.4 |
60.2 |
| H4 |
C2 |
C1 |
H3 |
179.4 |
180.2 |
| H5 |
C3 |
C4 |
O |
221.5 |
135.4 |
| H5 |
C3 |
C4 |
N1 |
44.0 |
315.3 |
| C4 |
C3 |
H5 |
H6 |
120.9 |
240.3 |
| H5 |
C3 |
C2 |
N2 |
299.7 |
76.5 |
| H5 |
C3 |
C2 |
H4 |
57.5 |
196.6 |
| H6 |
C3 |
C4 |
O |
342.1 |
15.8 |
| H6 |
C3 |
C4 |
N1 |
164.6 |
195.8 |
| C4 |
C3 |
H6 |
H5 |
239.1 |
119.6 |
| H6 |
C3 |
C2 |
N2 |
179.1 |
196.1 |
| H6 |
C3 |
C2 |
H4 |
297.0 |
316.2 |
| H8 |
C10 |
C5 |
C6 |
178.7 |
179.1 |
| H9 |
C9 |
C10 |
H8 |
0.6 |
359.9 |
| H9 |
C9 |
C8 |
C7 |
181.0 |
180.5 |
| H9 |
C9 |
C8 |
H10 |
1.0 |
0.6 |
| C9 |
C8 |
H10 |
C7 |
180.0 |
179.9 |
| H10 |
C8 |
C9 |
H9 |
1.0 |
0.6 |
| H10 |
C8 |
C7 |
C6 |
178.2 |
180.0 |
| H10 |
C8 |
C7 |
H11 |
358.2 |
360.0 |
| C8 |
C7 |
H11 |
C6 |
180.0 |
180.0 |
| H11 |
C7 |
C8 |
H10 |
358.2 |
360.0 |
| H11 |
C7 |
C6 |
N2 |
359.6 |
357.3 |
| C2 |
N2 |
H12 |
C6 |
136.1 |
180.0 |
| H12 |
N2 |
C2 |
H4 |
132.7 |
17.4 |