Atom Nomenclature for 965

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 965

Atom Name (V3) Atom Name (V2)
O37 O37
C35 C35
O36 O36
C34 C34
C32 C32
C31 C31
C30 C30
C29 C29
C28 C28
O27 O27
C26 C26
C25 C25
C17 C17
N09 N09
C16 C16
C18 C18
C23 C23
C22 C22
C21 C21
C20 C20
C19 C19
CL4 CL4
C39 C39
F41 F41
F40 F40
F42 F42
C08 C08
C07 C07
C01 C01
C02 C02
C03 C03
C04 C04
C05 C05
C06 C06
C10 C10
C15 C15
C14 C14
C13 C13
C12 C12
C11 C11
C33 C33
H37 H37
H341 H341
H342 H342
H31 H31
H30 H30
H29 H29
H261 H261
H262 H262
H251 H251
H252 H252
H171 H171
H172 H172
H161 H161
H162 H162
H23 H23
H22 H22
H21 H21
H081 H081
H082 H082
H07 H07
H02 H02
H03 H03
H04 H04
H05 H05
H06 H06
H15 H15
H14 H14
H13 H13
H12 H12
H111 H111
H33 H33