Atom Nomenclature for 94Z

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 94Z

Atom Name (V3) Atom Name (V2)
CAG C1
CAH C2
CAZ C3
FBA F1
CAY C4
CAX C5
CAW C6
NAV N1
CAF C7
CAE C8
CAU C9
CAT C10
NAS N2
CAR C11
OBC O1
CAQ C12
CAP C13
CAO C14
OAD O2
NAN N3
CAM C15
CAL C16
CAC C17
CAB C18
CAA C19
CAK C20
CAJ C21
OAI O3
NBB N4
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23