PDB Chemical Component 94O

Ideal Model

Chemical Description

Name 3-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-2H-indeno[2',1':5,6]pyrido[2,3-d]pyrimidine-2,6(3H)-dione
Formula C19 H16 N3 O8 P
Formal charge 0
Molecular weight 445.319 g/mol
Component type DNA linking
Nonstandard Parent Id DT

Chemical features

Atom count 47
Chiral atom count 3
Chiral atoms C4' C1' C3'
Observed leaving atoms H20 OP3
Bond count 51
Aromatic bond count 6

Chemical Identifiers

Systematic name (ACDLabs) 3-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-2H-indeno[2',1':5,6]pyrido[2,3-d]pyrimidine-2,6(3H)-dione
Systematic name (OpenEye OEToolkits) [(2~{R},3~{S},5~{R})-5-[6,17-bis(oxidanylidene)-5,7,9-triazatetracyclo[8.7.0.0^{3,8}.0^{11,16}]heptadeca-1,3,7,9,11(16),12,14-heptaen-5-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=C3C=C4C(=O)c5ccccc5C4=NC3=NC2=O
SMILES (CACTVS) O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)N2C=C3C=C4C(=O)c5ccccc5C4=NC3=NC2=O
Stereo SMILES (OpenEye) c1ccc2c(c1)C3=NC4=NC(=O)N(C=C4C=C3C2=O)[C@H]5C[C@@H]([C@H](O5)COP(=O)(O)O)O
InChI descriptor InChI=1S/C19H16N3O8P/c23-13-6-15(30-14(13)8-29-31(26,27)28)22-7-9-5-12-16(20-18(9)21-19(22)25)10-3-1-2-4-11(10)17(12)24/h1-5,7,13-15,23H,6,8H2,(H2,26,27,28)/t13-,14+,15+/m0/s1
InChIKey descriptor WDLPMEJMNGIHMS-RRFJBIMHSA-N

Status Information

Last modified 2018-11-16
Created 2017-12-14
Release status REL
Model PDB code 5YTG
Processing site PDBJ