PDB Chemical Component 94O
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 94O
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C29 |
C30 |
1.408 |
1.384 |
C29 |
C28 |
1.408 |
1.382 |
C30 |
C25 |
1.392 |
1.391 |
C28 |
C27 |
1.402 |
1.385 |
C25 |
C26 |
1.483 |
1.405 |
C25 |
C24 |
1.495 |
1.483 |
C27 |
C26 |
1.396 |
1.390 |
O31 |
C24 |
1.281 |
1.216 |
C26 |
C22 |
1.492 |
1.486 |
C24 |
C21 |
1.494 |
1.476 |
C22 |
C21 |
1.487 |
1.462 |
C22 |
N23 |
1.362 |
1.319 |
C21 |
C20 |
1.384 |
1.383 |
N23 |
C4 |
1.370 |
1.335 |
C20 |
C5 |
1.393 |
1.409 |
C4 |
C5 |
1.502 |
1.471 |
C4 |
N3 |
1.345 |
1.334 |
C5 |
C6 |
1.392 |
1.391 |
OP1 |
P |
1.500 |
1.480 |
P |
OP2 |
1.506 |
1.610 |
P |
O5' |
1.600 |
1.610 |
N3 |
C2 |
1.347 |
1.328 |
C6 |
N1 |
1.354 |
1.345 |
C2 |
N1 |
1.430 |
1.341 |
C2 |
O2 |
1.243 |
1.221 |
N1 |
C1' |
1.475 |
1.465 |
C5' |
O5' |
1.392 |
1.428 |
C5' |
C4' |
1.511 |
1.530 |
O4' |
C1' |
1.435 |
1.444 |
O4' |
C4' |
1.439 |
1.445 |
C1' |
C2' |
1.489 |
1.544 |
C4' |
C3' |
1.533 |
1.545 |
C3' |
C2' |
1.517 |
1.544 |
C3' |
O3' |
1.455 |
1.429 |
OP2 |
H1 |
0.950 |
0.967 |
C5' |
H3 |
1.100 |
1.089 |
C5' |
H4 |
1.100 |
1.090 |
C4' |
H5 |
1.100 |
1.089 |
C1' |
H6 |
1.100 |
1.090 |
C27 |
H9 |
1.080 |
1.080 |
C28 |
H10 |
1.080 |
1.080 |
C29 |
H11 |
1.080 |
1.080 |
C30 |
H12 |
1.080 |
1.080 |
C20 |
H13 |
1.080 |
1.079 |
C6 |
H14 |
1.080 |
1.081 |
C2' |
H17 |
1.100 |
1.090 |
C2' |
H18 |
1.100 |
1.090 |
C3' |
H19 |
1.100 |
1.091 |
O3' |
H20 |
0.950 |
0.967 |
P |
OP3 |
1.574 |
1.610 |
OP3 |
H2 |
0.950 |
0.967 |
Bond Angles for 94O
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C29 |
C30 |
C25 |
118.2 |
120.0 |
C30 |
C29 |
H11 |
119.1 |
119.9 |
C29 |
C30 |
H12 |
120.9 |
120.0 |
C29 |
C28 |
H10 |
119.4 |
119.8 |
C30 |
C25 |
C24 |
136.4 |
131.5 |
C25 |
C30 |
H12 |
120.9 |
120.0 |
C28 |
C27 |
H9 |
120.5 |
120.0 |
C25 |
C24 |
C21 |
113.4 |
107.4 |
C26 |
C22 |
C21 |
109.4 |
107.6 |
C22 |
C21 |
C24 |
103.7 |
107.2 |
C24 |
C21 |
C20 |
134.5 |
132.6 |
C22 |
C21 |
C20 |
121.8 |
120.1 |
C21 |
C20 |
C5 |
117.2 |
117.7 |
C21 |
C20 |
H13 |
121.4 |
121.2 |
N23 |
C4 |
C5 |
121.7 |
120.2 |
C4 |
C5 |
C20 |
120.0 |
119.3 |
C20 |
C5 |
C6 |
120.9 |
122.2 |
C5 |
C20 |
H13 |
121.4 |
121.1 |
C4 |
C5 |
C6 |
119.0 |
118.5 |
C5 |
C6 |
H14 |
119.9 |
120.8 |
OP1 |
P |
O5' |
113.1 |
109.5 |
OP1 |
P |
OP3 |
109.6 |
109.4 |
OP2 |
P |
O5' |
106.1 |
109.5 |
P |
OP2 |
H1 |
109.5 |
114.0 |
OP2 |
P |
OP3 |
108.4 |
109.5 |
O5' |
P |
OP3 |
102.7 |
109.4 |
N1 |
C1' |
C2' |
116.9 |
110.4 |
N1 |
C1' |
H6 |
108.1 |
110.4 |
C5' |
C4' |
C3' |
111.8 |
110.4 |
C4' |
C5' |
H3 |
108.2 |
109.5 |
C4' |
C5' |
H4 |
108.3 |
109.5 |
C5' |
C4' |
H5 |
110.8 |
110.3 |
O4' |
C1' |
C2' |
104.6 |
104.8 |
O4' |
C1' |
H6 |
108.6 |
110.4 |
O4' |
C4' |
C3' |
106.4 |
104.8 |
O4' |
C4' |
H5 |
111.9 |
110.4 |
C2' |
C1' |
H6 |
107.9 |
110.4 |
C1' |
C2' |
H17 |
110.2 |
110.5 |
C1' |
C2' |
H18 |
110.2 |
110.5 |
C4' |
C3' |
C2' |
102.1 |
104.1 |
C4' |
C3' |
O3' |
116.8 |
110.5 |
C3' |
C4' |
H5 |
110.5 |
110.4 |
C4' |
C3' |
H19 |
106.2 |
110.5 |
C3' |
C2' |
H17 |
110.3 |
110.5 |
C3' |
C2' |
H18 |
110.3 |
110.6 |
O3' |
C3' |
H19 |
107.1 |
110.5 |
C3' |
O3' |
H20 |
109.5 |
114.0 |
H3 |
C5' |
H4 |
109.5 |
109.5 |
H17 |
C2' |
H18 |
109.5 |
110.4 |
P |
OP3 |
H2 |
109.5 |
114.0 |
Torsion Angles for 94O
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C30 |
C29 |
C28 |
H10 |
180.7 |
179.9 |
C29 |
C30 |
C25 |
C24 |
180.4 |
180.0 |
C25 |
C30 |
C29 |
H12 |
180.0 |
180.1 |
C29 |
C28 |
C27 |
H9 |
178.2 |
180.1 |
C25 |
C30 |
C29 |
H11 |
180.4 |
180.1 |
C29 |
C30 |
C25 |
H12 |
180.0 |
179.9 |
C30 |
C25 |
C24 |
C21 |
179.5 |
180.0 |
C25 |
C26 |
C22 |
C21 |
0.4 |
360.0 |
C24 |
C25 |
C30 |
H12 |
0.4 |
0.1 |
C22 |
C21 |
C24 |
C25 |
360.0 |
360.0 |
C25 |
C24 |
C21 |
C20 |
179.6 |
180.0 |
C27 |
C26 |
C22 |
C21 |
181.3 |
180.0 |
C26 |
C22 |
C21 |
C24 |
359.8 |
0.0 |
C26 |
C22 |
C21 |
C20 |
180.1 |
180.0 |
C22 |
C21 |
C24 |
C20 |
180.3 |
180.0 |
C24 |
C21 |
C20 |
C5 |
180.2 |
180.0 |
C24 |
C21 |
C20 |
H13 |
0.2 |
359.9 |
C25 |
C24 |
C21 |
C22 |
360.0 |
360.0 |
C24 |
C21 |
C22 |
C20 |
179.7 |
180.0 |
C22 |
C21 |
C20 |
C5 |
359.8 |
0.0 |
C22 |
C21 |
C20 |
H13 |
179.8 |
180.0 |
C22 |
N23 |
C4 |
C5 |
0.1 |
0.1 |
C22 |
C21 |
C20 |
C24 |
179.6 |
180.0 |
C4 |
C5 |
C20 |
C21 |
359.8 |
0.0 |
C21 |
C20 |
C5 |
C6 |
179.5 |
180.0 |
C5 |
C20 |
C21 |
H13 |
180.0 |
180.0 |
N23 |
C4 |
C5 |
C20 |
0.2 |
359.9 |
N23 |
C4 |
C5 |
C6 |
180.5 |
180.0 |
C21 |
C20 |
C5 |
H13 |
180.0 |
180.0 |
C4 |
C5 |
C20 |
C6 |
180.3 |
180.0 |
C20 |
C5 |
C6 |
H14 |
0.7 |
0.0 |
C21 |
C20 |
C5 |
C4 |
359.8 |
0.0 |
C20 |
C5 |
C4 |
C6 |
179.7 |
180.0 |
C4 |
C5 |
C20 |
H13 |
179.8 |
180.1 |
C4 |
C5 |
C6 |
H14 |
180.3 |
180.0 |
C4 |
C5 |
C6 |
C20 |
179.7 |
180.0 |
C6 |
C5 |
C20 |
H13 |
359.5 |
0.0 |
OP2 |
P |
OP1 |
O5' |
122.9 |
120.1 |
OP1 |
P |
OP2 |
H1 |
0.0 |
60.0 |
OP2 |
P |
OP1 |
OP3 |
236.8 |
240.0 |
O5' |
P |
OP1 |
OP3 |
113.9 |
119.9 |
OP1 |
P |
OP3 |
H2 |
360.0 |
180.0 |
OP1 |
P |
OP2 |
O5' |
233.5 |
240.0 |
OP1 |
P |
OP2 |
OP3 |
123.8 |
120.0 |
O5' |
P |
OP2 |
OP3 |
250.3 |
240.0 |
OP2 |
P |
OP3 |
H2 |
127.6 |
300.0 |
OP1 |
P |
O5' |
OP3 |
242.0 |
240.1 |
O5' |
P |
OP2 |
H1 |
126.5 |
180.0 |
OP2 |
P |
O5' |
OP3 |
113.7 |
120.0 |
O5' |
P |
OP3 |
H2 |
239.6 |
60.1 |
C6 |
N1 |
C1' |
C2' |
279.9 |
117.9 |
C6 |
N1 |
C1' |
H6 |
158.1 |
355.6 |
C2 |
N1 |
C1' |
C2' |
104.4 |
298.2 |
C2 |
N1 |
C1' |
H6 |
342.6 |
175.9 |
O4' |
C1' |
N1 |
C2' |
119.5 |
115.4 |
O4' |
C1' |
N1 |
H6 |
241.3 |
237.7 |
C2' |
C1' |
N1 |
H6 |
121.8 |
122.3 |
N1 |
C1' |
C2' |
H17 |
214.4 |
261.5 |
N1 |
C1' |
C2' |
H18 |
335.4 |
24.0 |
C5' |
O5' |
P |
OP3 |
72.8 |
64.9 |
O4' |
C4' |
C5' |
C3' |
244.9 |
244.6 |
O4' |
C4' |
C5' |
H5 |
121.1 |
122.3 |
C5' |
C4' |
C3' |
C2' |
225.3 |
217.2 |
C5' |
C4' |
C3' |
O3' |
95.8 |
98.5 |
C3' |
C4' |
C5' |
H5 |
236.3 |
237.7 |
C5' |
C4' |
C3' |
H19 |
336.5 |
335.9 |
H3 |
C5' |
C4' |
H4 |
118.6 |
120.0 |
N1 |
C1' |
O4' |
C2' |
233.3 |
241.1 |
N1 |
C1' |
O4' |
H6 |
118.4 |
122.3 |
C1' |
O4' |
C4' |
C3' |
3.7 |
40.5 |
C1' |
O4' |
C4' |
H5 |
243.0 |
281.6 |
C2' |
C1' |
O4' |
H6 |
245.0 |
241.2 |
O4' |
C1' |
C2' |
H17 |
91.7 |
142.6 |
O4' |
C1' |
C2' |
H18 |
212.7 |
265.2 |
C5' |
C4' |
O4' |
C3' |
118.9 |
118.9 |
O4' |
C4' |
C5' |
H3 |
6.7 |
309.6 |
O4' |
C4' |
C5' |
H4 |
248.1 |
189.6 |
C5' |
C4' |
O4' |
H5 |
239.6 |
237.7 |
O4' |
C4' |
C3' |
C2' |
339.8 |
336.1 |
O4' |
C4' |
C3' |
O3' |
210.3 |
217.3 |
C3' |
C4' |
O4' |
H5 |
120.7 |
118.9 |
O4' |
C4' |
C3' |
H19 |
91.0 |
94.7 |
N1 |
C1' |
C2' |
H6 |
238.1 |
237.6 |
O4' |
C1' |
C2' |
H6 |
115.4 |
118.8 |
C4' |
C3' |
C2' |
C1' |
29.4 |
360.0 |
C3' |
C2' |
C1' |
H17 |
240.5 |
241.4 |
C3' |
C2' |
C1' |
H18 |
119.5 |
118.8 |
H17 |
C2' |
C1' |
H18 |
239.0 |
237.5 |
C3' |
C4' |
C5' |
H3 |
121.9 |
65.0 |
C3' |
C4' |
C5' |
H4 |
3.2 |
305.0 |
C5' |
C4' |
C3' |
H5 |
123.9 |
122.3 |
O4' |
C4' |
C3' |
H5 |
238.4 |
241.1 |
C4' |
C3' |
C2' |
H17 |
269.9 |
241.3 |
C4' |
C3' |
C2' |
H18 |
148.9 |
118.7 |
O3' |
C3' |
C4' |
H19 |
119.3 |
122.7 |
C4' |
C3' |
O3' |
H20 |
180.0 |
180.0 |
C3' |
C2' |
C1' |
H6 |
216.8 |
265.2 |
C1' |
C2' |
C3' |
H17 |
119.5 |
118.7 |
C1' |
C2' |
C3' |
H18 |
240.5 |
241.3 |
C4' |
C3' |
C2' |
O3' |
230.9 |
241.3 |
C2' |
C3' |
C4' |
H5 |
101.4 |
95.0 |
C4' |
C3' |
C2' |
H19 |
111.1 |
118.6 |
H17 |
C2' |
C3' |
H18 |
121.0 |
122.6 |
C4' |
C3' |
O3' |
C2' |
121.8 |
114.7 |
O3' |
C3' |
C4' |
H5 |
331.9 |
336.2 |
C4' |
C3' |
O3' |
H19 |
241.2 |
237.4 |
O3' |
C3' |
C2' |
H17 |
39.0 |
360.0 |
O3' |
C3' |
C2' |
H18 |
277.9 |
237.4 |
H1 |
OP2 |
P |
O5' |
126.5 |
180.0 |
H1 |
OP2 |
P |
OP3 |
236.2 |
300.0 |
H3 |
C5' |
C4' |
C3' |
121.9 |
65.0 |
C4' |
C5' |
H3 |
H4 |
242.2 |
240.0 |
H3 |
C5' |
C4' |
H5 |
245.6 |
187.3 |
H4 |
C5' |
C4' |
C3' |
3.2 |
305.0 |
C4' |
C5' |
H4 |
H3 |
117.8 |
120.0 |
H4 |
C5' |
C4' |
H5 |
127.0 |
67.3 |
C5' |
C4' |
H5 |
C3' |
235.5 |
237.7 |
H5 |
C4' |
C5' |
H3 |
245.6 |
187.3 |
H5 |
C4' |
C5' |
H4 |
127.0 |
67.3 |
O4' |
C4' |
H5 |
C3' |
118.3 |
115.4 |
H5 |
C4' |
C3' |
C2' |
101.4 |
95.0 |
H5 |
C4' |
C3' |
O3' |
331.9 |
336.2 |
H5 |
C4' |
C3' |
H19 |
212.6 |
213.6 |
N1 |
C1' |
H6 |
C2' |
127.2 |
122.4 |
O4' |
C1' |
H6 |
C2' |
247.2 |
244.6 |
H6 |
C1' |
C2' |
H17 |
336.3 |
23.8 |
H6 |
C1' |
C2' |
H18 |
97.3 |
146.4 |
H10 |
C28 |
C27 |
H9 |
358.2 |
0.1 |
H11 |
C29 |
C30 |
C25 |
180.4 |
180.1 |
H11 |
C29 |
C30 |
H12 |
0.4 |
360.0 |
H11 |
C29 |
C28 |
H10 |
0.7 |
359.9 |
C29 |
C30 |
H12 |
C25 |
180.0 |
180.1 |
H12 |
C30 |
C29 |
H11 |
0.4 |
360.0 |
H12 |
C30 |
C25 |
C24 |
0.4 |
0.1 |
C21 |
C20 |
H13 |
C5 |
180.0 |
180.0 |
H13 |
C20 |
C5 |
C6 |
359.5 |
0.0 |
H17 |
C2' |
C1' |
H6 |
336.3 |
23.8 |
C1' |
C2' |
H17 |
H18 |
121.4 |
122.6 |
C3' |
C2' |
H17 |
H18 |
238.5 |
237.3 |
H18 |
C2' |
C1' |
H6 |
97.3 |
146.4 |
C1' |
C2' |
H18 |
H17 |
238.6 |
237.4 |
C3' |
C2' |
H18 |
H17 |
121.5 |
122.6 |
C4' |
C3' |
H19 |
C2' |
251.8 |
245.4 |
C4' |
C3' |
H19 |
O3' |
125.4 |
122.7 |
H19 |
C3' |
C4' |
H5 |
212.6 |
213.6 |
H19 |
C3' |
C2' |
H17 |
158.8 |
122.7 |
H19 |
C3' |
C2' |
H18 |
37.8 |
0.1 |
H19 |
C3' |
O3' |
H20 |
298.8 |
302.6 |
H20 |
O3' |
C3' |
H19 |
298.8 |
302.6 |
OP1 |
P |
OP3 |
O5' |
120.4 |
119.9 |
OP2 |
P |
OP3 |
O5' |
248.0 |
240.0 |
OP3 |
P |
OP2 |
H1 |
236.2 |
300.0 |