PDB Chemical Component 94O

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 94O

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C29 C30 1.408 1.384
C29 C28 1.408 1.382
C30 C25 1.392 1.391
C28 C27 1.402 1.385
C25 C26 1.483 1.405
C25 C24 1.495 1.483
C27 C26 1.396 1.390
O31 C24 1.281 1.216
C26 C22 1.492 1.486
C24 C21 1.494 1.476
C22 C21 1.487 1.462
C22 N23 1.362 1.319
C21 C20 1.384 1.383
N23 C4 1.370 1.335
C20 C5 1.393 1.409
C4 C5 1.502 1.471
C4 N3 1.345 1.334
C5 C6 1.392 1.391
OP1 P 1.500 1.480
P OP2 1.506 1.610
P O5' 1.600 1.610
N3 C2 1.347 1.328
C6 N1 1.354 1.345
C2 N1 1.430 1.341
C2 O2 1.243 1.221
N1 C1' 1.475 1.465
C5' O5' 1.392 1.428
C5' C4' 1.511 1.530
O4' C1' 1.435 1.444
O4' C4' 1.439 1.445
C1' C2' 1.489 1.544
C4' C3' 1.533 1.545
C3' C2' 1.517 1.544
C3' O3' 1.455 1.429
OP2 H1 0.950 0.967
C5' H3 1.100 1.089
C5' H4 1.100 1.090
C4' H5 1.100 1.089
C1' H6 1.100 1.090
C27 H9 1.080 1.080
C28 H10 1.080 1.080
C29 H11 1.080 1.080
C30 H12 1.080 1.080
C20 H13 1.080 1.079
C6 H14 1.080 1.081
C2' H17 1.100 1.090
C2' H18 1.100 1.090
C3' H19 1.100 1.091
O3' H20 0.950 0.967
P OP3 1.574 1.610
OP3 H2 0.950 0.967

Bond Angles for 94O

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C29 C30 C25 118.2 120.0
C30 C29 H11 119.1 119.9
C29 C30 H12 120.9 120.0
C29 C28 H10 119.4 119.8
C30 C25 C24 136.4 131.5
C25 C30 H12 120.9 120.0
C28 C27 H9 120.5 120.0
C25 C24 C21 113.4 107.4
C26 C22 C21 109.4 107.6
C22 C21 C24 103.7 107.2
C24 C21 C20 134.5 132.6
C22 C21 C20 121.8 120.1
C21 C20 C5 117.2 117.7
C21 C20 H13 121.4 121.2
N23 C4 C5 121.7 120.2
C4 C5 C20 120.0 119.3
C20 C5 C6 120.9 122.2
C5 C20 H13 121.4 121.1
C4 C5 C6 119.0 118.5
C5 C6 H14 119.9 120.8
OP1 P O5' 113.1 109.5
OP1 P OP3 109.6 109.4
OP2 P O5' 106.1 109.5
P OP2 H1 109.5 114.0
OP2 P OP3 108.4 109.5
O5' P OP3 102.7 109.4
N1 C1' C2' 116.9 110.4
N1 C1' H6 108.1 110.4
C5' C4' C3' 111.8 110.4
C4' C5' H3 108.2 109.5
C4' C5' H4 108.3 109.5
C5' C4' H5 110.8 110.3
O4' C1' C2' 104.6 104.8
O4' C1' H6 108.6 110.4
O4' C4' C3' 106.4 104.8
O4' C4' H5 111.9 110.4
C2' C1' H6 107.9 110.4
C1' C2' H17 110.2 110.5
C1' C2' H18 110.2 110.5
C4' C3' C2' 102.1 104.1
C4' C3' O3' 116.8 110.5
C3' C4' H5 110.5 110.4
C4' C3' H19 106.2 110.5
C3' C2' H17 110.3 110.5
C3' C2' H18 110.3 110.6
O3' C3' H19 107.1 110.5
C3' O3' H20 109.5 114.0
H3 C5' H4 109.5 109.5
H17 C2' H18 109.5 110.4
P OP3 H2 109.5 114.0

Torsion Angles for 94O

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C30 C29 C28 H10 180.7 179.9
C29 C30 C25 C24 180.4 180.0
C25 C30 C29 H12 180.0 180.1
C29 C28 C27 H9 178.2 180.1
C25 C30 C29 H11 180.4 180.1
C29 C30 C25 H12 180.0 179.9
C30 C25 C24 C21 179.5 180.0
C25 C26 C22 C21 0.4 360.0
C24 C25 C30 H12 0.4 0.1
C22 C21 C24 C25 360.0 360.0
C25 C24 C21 C20 179.6 180.0
C27 C26 C22 C21 181.3 180.0
C26 C22 C21 C24 359.8 0.0
C26 C22 C21 C20 180.1 180.0
C22 C21 C24 C20 180.3 180.0
C24 C21 C20 C5 180.2 180.0
C24 C21 C20 H13 0.2 359.9
C25 C24 C21 C22 360.0 360.0
C24 C21 C22 C20 179.7 180.0
C22 C21 C20 C5 359.8 0.0
C22 C21 C20 H13 179.8 180.0
C22 N23 C4 C5 0.1 0.1
C22 C21 C20 C24 179.6 180.0
C4 C5 C20 C21 359.8 0.0
C21 C20 C5 C6 179.5 180.0
C5 C20 C21 H13 180.0 180.0
N23 C4 C5 C20 0.2 359.9
N23 C4 C5 C6 180.5 180.0
C21 C20 C5 H13 180.0 180.0
C4 C5 C20 C6 180.3 180.0
C20 C5 C6 H14 0.7 0.0
C21 C20 C5 C4 359.8 0.0
C20 C5 C4 C6 179.7 180.0
C4 C5 C20 H13 179.8 180.1
C4 C5 C6 H14 180.3 180.0
C4 C5 C6 C20 179.7 180.0
C6 C5 C20 H13 359.5 0.0
OP2 P OP1 O5' 122.9 120.1
OP1 P OP2 H1 0.0 60.0
OP2 P OP1 OP3 236.8 240.0
O5' P OP1 OP3 113.9 119.9
OP1 P OP3 H2 360.0 180.0
OP1 P OP2 O5' 233.5 240.0
OP1 P OP2 OP3 123.8 120.0
O5' P OP2 OP3 250.3 240.0
OP2 P OP3 H2 127.6 300.0
OP1 P O5' OP3 242.0 240.1
O5' P OP2 H1 126.5 180.0
OP2 P O5' OP3 113.7 120.0
O5' P OP3 H2 239.6 60.1
C6 N1 C1' C2' 279.9 117.9
C6 N1 C1' H6 158.1 355.6
C2 N1 C1' C2' 104.4 298.2
C2 N1 C1' H6 342.6 175.9
O4' C1' N1 C2' 119.5 115.4
O4' C1' N1 H6 241.3 237.7
C2' C1' N1 H6 121.8 122.3
N1 C1' C2' H17 214.4 261.5
N1 C1' C2' H18 335.4 24.0
C5' O5' P OP3 72.8 64.9
O4' C4' C5' C3' 244.9 244.6
O4' C4' C5' H5 121.1 122.3
C5' C4' C3' C2' 225.3 217.2
C5' C4' C3' O3' 95.8 98.5
C3' C4' C5' H5 236.3 237.7
C5' C4' C3' H19 336.5 335.9
H3 C5' C4' H4 118.6 120.0
N1 C1' O4' C2' 233.3 241.1
N1 C1' O4' H6 118.4 122.3
C1' O4' C4' C3' 3.7 40.5
C1' O4' C4' H5 243.0 281.6
C2' C1' O4' H6 245.0 241.2
O4' C1' C2' H17 91.7 142.6
O4' C1' C2' H18 212.7 265.2
C5' C4' O4' C3' 118.9 118.9
O4' C4' C5' H3 6.7 309.6
O4' C4' C5' H4 248.1 189.6
C5' C4' O4' H5 239.6 237.7
O4' C4' C3' C2' 339.8 336.1
O4' C4' C3' O3' 210.3 217.3
C3' C4' O4' H5 120.7 118.9
O4' C4' C3' H19 91.0 94.7
N1 C1' C2' H6 238.1 237.6
O4' C1' C2' H6 115.4 118.8
C4' C3' C2' C1' 29.4 360.0
C3' C2' C1' H17 240.5 241.4
C3' C2' C1' H18 119.5 118.8
H17 C2' C1' H18 239.0 237.5
C3' C4' C5' H3 121.9 65.0
C3' C4' C5' H4 3.2 305.0
C5' C4' C3' H5 123.9 122.3
O4' C4' C3' H5 238.4 241.1
C4' C3' C2' H17 269.9 241.3
C4' C3' C2' H18 148.9 118.7
O3' C3' C4' H19 119.3 122.7
C4' C3' O3' H20 180.0 180.0
C3' C2' C1' H6 216.8 265.2
C1' C2' C3' H17 119.5 118.7
C1' C2' C3' H18 240.5 241.3
C4' C3' C2' O3' 230.9 241.3
C2' C3' C4' H5 101.4 95.0
C4' C3' C2' H19 111.1 118.6
H17 C2' C3' H18 121.0 122.6
C4' C3' O3' C2' 121.8 114.7
O3' C3' C4' H5 331.9 336.2
C4' C3' O3' H19 241.2 237.4
O3' C3' C2' H17 39.0 360.0
O3' C3' C2' H18 277.9 237.4
H1 OP2 P O5' 126.5 180.0
H1 OP2 P OP3 236.2 300.0
H3 C5' C4' C3' 121.9 65.0
C4' C5' H3 H4 242.2 240.0
H3 C5' C4' H5 245.6 187.3
H4 C5' C4' C3' 3.2 305.0
C4' C5' H4 H3 117.8 120.0
H4 C5' C4' H5 127.0 67.3
C5' C4' H5 C3' 235.5 237.7
H5 C4' C5' H3 245.6 187.3
H5 C4' C5' H4 127.0 67.3
O4' C4' H5 C3' 118.3 115.4
H5 C4' C3' C2' 101.4 95.0
H5 C4' C3' O3' 331.9 336.2
H5 C4' C3' H19 212.6 213.6
N1 C1' H6 C2' 127.2 122.4
O4' C1' H6 C2' 247.2 244.6
H6 C1' C2' H17 336.3 23.8
H6 C1' C2' H18 97.3 146.4
H10 C28 C27 H9 358.2 0.1
H11 C29 C30 C25 180.4 180.1
H11 C29 C30 H12 0.4 360.0
H11 C29 C28 H10 0.7 359.9
C29 C30 H12 C25 180.0 180.1
H12 C30 C29 H11 0.4 360.0
H12 C30 C25 C24 0.4 0.1
C21 C20 H13 C5 180.0 180.0
H13 C20 C5 C6 359.5 0.0
H17 C2' C1' H6 336.3 23.8
C1' C2' H17 H18 121.4 122.6
C3' C2' H17 H18 238.5 237.3
H18 C2' C1' H6 97.3 146.4
C1' C2' H18 H17 238.6 237.4
C3' C2' H18 H17 121.5 122.6
C4' C3' H19 C2' 251.8 245.4
C4' C3' H19 O3' 125.4 122.7
H19 C3' C4' H5 212.6 213.6
H19 C3' C2' H17 158.8 122.7
H19 C3' C2' H18 37.8 0.1
H19 C3' O3' H20 298.8 302.6
H20 O3' C3' H19 298.8 302.6
OP1 P OP3 O5' 120.4 119.9
OP2 P OP3 O5' 248.0 240.0
OP3 P OP2 H1 236.2 300.0