PDB Chemical Component 94D
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 94D
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O19 |
P12 |
1.541 |
1.480 |
| C15 |
C14 |
1.509 |
1.530 |
| C10 |
C9 |
1.349 |
1.346 |
| C10 |
C11 |
1.412 |
1.410 |
| P12 |
O18 |
1.568 |
1.610 |
| P12 |
C9 |
1.908 |
1.814 |
| P12 |
O17 |
1.498 |
1.610 |
| C16 |
C14 |
1.536 |
1.530 |
| C9 |
O8 |
1.342 |
1.344 |
| C11 |
C7 |
1.352 |
1.360 |
| C14 |
C13 |
1.523 |
1.530 |
| O8 |
C7 |
1.361 |
1.347 |
| C7 |
C3 |
1.449 |
1.478 |
| C13 |
C4 |
1.519 |
1.507 |
| C3 |
C4 |
1.370 |
1.347 |
| C3 |
N2 |
1.387 |
1.333 |
| C4 |
S5 |
1.742 |
1.762 |
| N2 |
C1 |
1.307 |
1.297 |
| S5 |
C1 |
1.733 |
1.761 |
| C1 |
N6 |
1.341 |
1.385 |
| C10 |
H1 |
1.080 |
1.080 |
| C11 |
H2 |
1.080 |
1.080 |
| C15 |
H3 |
1.100 |
1.090 |
| C15 |
H4 |
1.100 |
1.090 |
| C15 |
H5 |
1.100 |
1.090 |
| C14 |
H6 |
1.100 |
1.090 |
| C13 |
H7 |
1.100 |
1.089 |
| C13 |
H8 |
1.100 |
1.090 |
| C16 |
H9 |
1.099 |
1.090 |
| C16 |
H10 |
1.100 |
1.090 |
| C16 |
H11 |
1.100 |
1.090 |
| N6 |
H12 |
1.000 |
0.969 |
| N6 |
H13 |
1.000 |
0.971 |
| O17 |
H14 |
0.950 |
0.967 |
| O18 |
H15 |
0.950 |
0.967 |
Bond Angles for 94D
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C15 |
C14 |
C13 |
110.3 |
109.5 |
| C14 |
C15 |
H3 |
109.5 |
109.5 |
| C14 |
C15 |
H4 |
109.4 |
109.5 |
| C14 |
C15 |
H5 |
109.4 |
109.4 |
| C15 |
C14 |
H6 |
108.5 |
109.5 |
| C10 |
C9 |
O8 |
110.4 |
108.7 |
| C11 |
C10 |
H1 |
126.8 |
126.5 |
| C10 |
C11 |
H2 |
126.8 |
126.6 |
| P12 |
O18 |
H15 |
109.5 |
114.0 |
| P12 |
O17 |
H14 |
109.5 |
114.0 |
| C16 |
C14 |
H6 |
108.2 |
109.4 |
| C13 |
C14 |
H6 |
108.4 |
109.5 |
| C14 |
C13 |
H7 |
108.0 |
109.5 |
| C14 |
C13 |
H8 |
108.0 |
109.5 |
| C7 |
C3 |
C4 |
126.9 |
122.4 |
| C7 |
C3 |
N2 |
117.1 |
122.4 |
| C13 |
C4 |
S5 |
122.3 |
125.8 |
| C4 |
C3 |
N2 |
116.0 |
115.3 |
| C3 |
C4 |
S5 |
108.8 |
108.3 |
| C3 |
N2 |
C1 |
110.8 |
116.8 |
| N2 |
C1 |
N6 |
123.6 |
125.2 |
| C1 |
N6 |
H12 |
109.5 |
120.1 |
| C1 |
N6 |
H13 |
109.4 |
120.0 |
| H3 |
C15 |
H4 |
109.5 |
109.5 |
| H3 |
C15 |
H5 |
109.5 |
109.5 |
| H4 |
C15 |
H5 |
109.5 |
109.5 |
| H7 |
C13 |
H8 |
109.5 |
109.5 |
| H9 |
C16 |
H10 |
109.5 |
109.5 |
| H9 |
C16 |
H11 |
109.4 |
109.5 |
| H10 |
C16 |
H11 |
109.5 |
109.5 |
| H12 |
N6 |
H13 |
109.5 |
120.0 |
Torsion Angles for 94D
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O19 |
P12 |
O18 |
H15 |
360.0 |
59.9 |
| O19 |
P12 |
O17 |
H14 |
360.0 |
180.0 |
| C16 |
C14 |
C15 |
H6 |
118.5 |
240.1 |
| C13 |
C14 |
C15 |
H6 |
241.4 |
120.1 |
| C15 |
C14 |
C13 |
H7 |
186.7 |
65.0 |
| C15 |
C14 |
C13 |
H8 |
305.0 |
305.0 |
| H3 |
C15 |
C14 |
H4 |
240.0 |
239.9 |
| H3 |
C15 |
C14 |
H5 |
120.0 |
120.0 |
| H4 |
C15 |
C14 |
H5 |
240.0 |
240.0 |
| C11 |
C10 |
C9 |
O8 |
0.2 |
0.0 |
| O18 |
P12 |
O17 |
H14 |
136.1 |
300.0 |
| C16 |
C14 |
C15 |
H3 |
180.0 |
180.0 |
| C16 |
C14 |
C15 |
H4 |
300.0 |
300.0 |
| C16 |
C14 |
C15 |
H5 |
60.0 |
60.0 |
| C15 |
C14 |
C16 |
H6 |
241.3 |
119.9 |
| C13 |
C14 |
C16 |
H6 |
118.7 |
240.0 |
| C16 |
C14 |
C13 |
H7 |
309.4 |
305.0 |
| C16 |
C14 |
C13 |
H8 |
67.7 |
185.0 |
| C11 |
C7 |
C3 |
N2 |
167.8 |
324.7 |
| C13 |
C14 |
C15 |
H3 |
302.9 |
60.0 |
| C13 |
C14 |
C15 |
H4 |
62.9 |
180.0 |
| C13 |
C14 |
C15 |
H5 |
182.9 |
300.0 |
| C15 |
C14 |
C13 |
H6 |
118.7 |
240.0 |
| C16 |
C14 |
C13 |
H6 |
241.4 |
119.9 |
| C14 |
C13 |
C4 |
S5 |
45.3 |
270.0 |
| H7 |
C13 |
C14 |
H8 |
241.6 |
120.0 |
| C4 |
C3 |
C7 |
N2 |
178.4 |
180.3 |
| C7 |
C3 |
C4 |
S5 |
181.4 |
180.0 |
| C7 |
C3 |
N2 |
C1 |
179.1 |
180.1 |
| C13 |
C4 |
C3 |
N2 |
180.1 |
180.2 |
| C3 |
C4 |
C13 |
S5 |
179.6 |
180.0 |
| C7 |
C3 |
C4 |
N2 |
181.6 |
179.7 |
| C13 |
C4 |
C3 |
S5 |
180.4 |
180.0 |
| C4 |
C3 |
N2 |
C1 |
0.5 |
359.8 |
| C7 |
C3 |
N2 |
C4 |
178.6 |
180.3 |
| N2 |
C3 |
C4 |
S5 |
359.8 |
0.2 |
| C3 |
N2 |
C1 |
N6 |
178.8 |
180.0 |
| S5 |
C4 |
C3 |
N2 |
359.8 |
0.2 |
| N2 |
C1 |
N6 |
H12 |
0.0 |
359.9 |
| N2 |
C1 |
N6 |
H13 |
120.0 |
180.0 |
| C3 |
C4 |
S5 |
C1 |
359.9 |
359.8 |
| S5 |
C1 |
N6 |
H12 |
179.3 |
179.9 |
| S5 |
C1 |
N6 |
H13 |
299.3 |
359.9 |
| H12 |
N6 |
C1 |
H13 |
240.0 |
179.9 |
| H1 |
C10 |
C9 |
O8 |
180.2 |
180.0 |
| H1 |
C10 |
C11 |
H2 |
359.5 |
359.9 |
| H2 |
C11 |
C10 |
H1 |
359.5 |
359.9 |
| H3 |
C15 |
C14 |
C13 |
302.9 |
60.0 |
| C14 |
C15 |
H3 |
H4 |
120.0 |
120.1 |
| C14 |
C15 |
H3 |
H5 |
240.0 |
240.1 |
| H3 |
C15 |
C14 |
H6 |
61.5 |
299.9 |
| H4 |
C15 |
H3 |
H5 |
120.0 |
120.0 |
| H4 |
C15 |
C14 |
C13 |
62.9 |
180.0 |
| C14 |
C15 |
H4 |
H3 |
240.0 |
240.0 |
| C14 |
C15 |
H4 |
H5 |
120.0 |
119.9 |
| H4 |
C15 |
C14 |
H6 |
181.5 |
59.9 |
| H3 |
C15 |
H4 |
H5 |
240.0 |
240.0 |
| H5 |
C15 |
C14 |
C13 |
182.9 |
300.0 |
| C14 |
C15 |
H5 |
H3 |
120.0 |
120.0 |
| C14 |
C15 |
H5 |
H4 |
240.0 |
240.0 |
| H5 |
C15 |
C14 |
H6 |
301.5 |
179.9 |
| H3 |
C15 |
H5 |
H4 |
120.0 |
120.0 |
| C15 |
C14 |
H6 |
C13 |
240.2 |
120.1 |
| H6 |
C14 |
C15 |
H3 |
61.5 |
299.9 |
| H6 |
C14 |
C15 |
H4 |
181.5 |
59.9 |
| H6 |
C14 |
C15 |
H5 |
301.5 |
179.9 |
| H6 |
C14 |
C13 |
H7 |
68.0 |
185.0 |
| H6 |
C14 |
C13 |
H8 |
186.3 |
65.0 |
| H7 |
C13 |
C14 |
H6 |
68.0 |
185.0 |
| C14 |
C13 |
H7 |
H8 |
117.4 |
240.0 |
| H7 |
C13 |
C4 |
S5 |
284.5 |
30.0 |
| H8 |
C13 |
C14 |
H6 |
186.3 |
65.0 |
| C14 |
C13 |
H8 |
H7 |
242.6 |
120.0 |
| H8 |
C13 |
C4 |
S5 |
166.1 |
150.0 |
| H9 |
C16 |
C14 |
H6 |
298.7 |
60.0 |
| H10 |
C16 |
H9 |
H11 |
120.0 |
120.0 |
| H10 |
C16 |
C14 |
H6 |
58.7 |
180.0 |
| H9 |
C16 |
H10 |
H11 |
240.0 |
240.0 |
| H11 |
C16 |
C14 |
H6 |
178.7 |
300.0 |
| H9 |
C16 |
H11 |
H10 |
120.0 |
120.0 |
| C1 |
N6 |
H12 |
H13 |
120.0 |
180.1 |
| C1 |
N6 |
H13 |
H12 |
240.0 |
179.9 |