Atom Nomenclature for 93N

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 93N

Atom Name (V3) Atom Name (V2)
N1 N1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
C9 C9
C10 C10
C11 C11
C12 C12
O13 O13
C14 C14
C15 C15
C16 C16
N17 N17
C18 C18
N19 N19
C20 C20
F21 F21
F22 F22
F23 F23
C24 C24
N25 N25
C26 C26
C27 C27
C28 C28
C29 C29
H3 H3
H4 H4
H5 H5
H8 H8
H11 H11
H12 H12
H14 H14
H14A H14A
H15 H15
H15A H15A
H16 H16
H16A H16A
H24 H24
H24A H24A
H26 H26
H26A H26A
H27 H27
H27A H27A
H28 H28
H28A H28A
H29 H29
H29A H29A
H29B H29B