Atom Nomenclature for 93J

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 93J

Atom Name (V3) Atom Name (V2)
C10 C1
C13 C2
C15 C3
C17 C4
C20 C5
C21 C6
C22 C7
C24 C8
C01 C9
C02 C10
C03 C11
C04 C12
O01 O1
N01 N1
N02 N2
C05 C13
C06 C14
N03 N3
C07 C15
C08 C16
C09 C17
C11 C18
C12 C19
C14 C20
O02 O2
C16 C21
C18 C22
N04 N4
N05 N5
C19 C23
C23 C24
F01 F1
CL1 CL1
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24