Atom Nomenclature for 92T

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 92T

Atom Name (V3) Atom Name (V2)
C2 C1
C4 C2
OBD O1
CAY C3
NAX N1
CAW C4
CBC C5
CBB C6
CBE C7
NBF N2
CBA C8
CAZ C9
CAV C10
NAU N3
CAN C11
CBH C12
CBG C13
CAH C14
CAE C15
NAD N4
NAC N5
CAB C16
N3 N6
N1 N7
C6 C17
C5 C18
NAA N8
CAG C19
CAI C20
CL1 CL1
CAJ C21
CAK C22
CAL C23
CAM C24
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17