Atom Nomenclature for 92R

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 92R

Atom Name (V3) Atom Name (V2)
O1 O1
C9 C9
C5 C5
C4 C4
C3 C3
C2 C2
N N
C8 C8
C7 C7
C6 C6
C1 C1
O O
C C
C10 C10
C18 C18
C17 C17
C13 C13
C12 C12
C11 C11
C14 C14
N1 N1
C16 C16
C15 C15
H H
H4 H4
H3 H3
H2 H2
H7 H7
HC1 HC1
HC2 HC2
HC3 HC3
H18 H18
H11 H11
H17 H17
H12 H12
H141 H141
H142 H142
H161 H161
H162 H162
H163 H163
H151 H151
H152 H152
H153 H153