Atom Nomenclature for 929

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 929

Atom Name (V3) Atom Name (V2)
O6 O6
C34 C34
N4 N4
C35 C35
C36 C36
C42 C42
C41 C41
C40 C40
C39 C39
C38 C38
C37 C37
C30 C30
C31 C31
C32 C32
N5 N5
S S
O8 O8
C44 C44
O7 O7
C43 C43
C33 C33
C29 C29
C27 C27
C28 C28
O5 O5
N1 N1
C5 C5
C6 C6
O2 O2
C20 C20
C21 C21
C26 C26
C25 C25
F1 F1
C24 C24
C23 C23
F2 F2
C22 C22
C1 C1
O1 O1
C3 C3
C2 C2
C7 C7
C4 C4
O3 O3
N2 N2
C8 C8
C10 C10
C12 C12
C11 C11
C9 C9
O4 O4
N3 N3
C13 C13
C14 C14
C19 C19
C18 C18
C17 C17
C16 C16
C15 C15
HN4 HN4
H35 H35
H42 H42
H41 H41
H40 H40
H39 H39
H38 H38
H37 H37
H37A H37A
H37B H37B
H31 H31
H44 H44
H44A H44A
H44B H44B
H43 H43
H43A H43A
H43B H43B
H33 H33
H29 H29
HN1 HN1
H5 H5
H6 H6
H6A H6A
H20 H20
H20A H20A
H26 H26
H24 H24
H22 H22
H1 H1
HO1 HO1
H3 H3
H3A H3A
H2 H2
H7 H7
H7A H7A
H7B H7B
HN2 HN2
H8 H8
H10 H10
H12 H12
H12A H12A
H12B H12B
H11 H11
H11A H11A
H11B H11B
HN3 HN3
H13 H13
H13A H13A
H19 H19
H18 H18
H17 H17
H16 H16
H15 H15