Atom Nomenclature for 928

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 928

Atom Name (V3) Atom Name (V2)
N15 N15
C14 C14
C4 C4
C3 C3
N2 N2
C5 C5
N13 N13
N1 N1
C6 C6
C11 C11
C10 C10
C9 C9
CL12 CL12
C8 C8
C7 C7
H3 H3
HN13 HN13
HN1A HN1A
H11 H11
H10 H10
H8 H8
H7 H7