Atom Nomenclature for 922

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 922

Atom Name (V3) Atom Name (V2)
C37 C37
C38 C38
C39 C39
C40 C40
C41 C41
C36 C36
C33 C33
O32 O32
C30 C30
O31 O31
N29 N29
C25 C25
C26 C26
C28 C28
C27 C27
P24 P24
O34 O34
O35 O35
O23 O23
C1 C1
C2 C2
O14 O14
O13 O13
C3 C3
C8 C8
C4 C4
C5 C5
C6 C6
C7 C7
N9 N9
C10 C10
N12 N12
N11 N11
H37 H37
H38 H38
H39 H39
H40 H40
H41 H41
H331 1H33
H332 2H33
HN29 HN29
H25 H25
H26 H26
H281 1H28
H282 2H28
H283 3H28
H271 1H27
H272 2H27
H273 3H27
HO35 HO35
H1 H1
HO13 HO13
H8 H8
H4 H4
H5 H5
H6 H6
HN9 HN9
HN12 HN12
H111 1H11
H112 2H11