Atom Nomenclature for 91U

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 91U

Atom Name (V3) Atom Name (V2)
C47 C47
O48 O48
C49 C49
C1 C1
C6 C6
C5 C5
C4 C4
C3 C3
C2 C2
N N
C15 C15
C31 C31
C14 C14
O32 O32
N1 N1
C32 C32
C7 C7
O22 O22
C35 C35
C34 C34
C33 C33
N23 N23
C24 C24
C25 C25
C26 C26
C27 C27
C28 C28
C29 C29
C30 C30
CL21 CL21
H49 H49
H49A H49A
H49B H49B
H1 H1
H6 H6
H6A H6A
H5 H5
H5A H5A
H4 H4
H4A H4A
H3 H3
H3A H3A
H2 H2
H2A H2A
HN HN
H15 H15
H31 H31
H31A H31A
H32 H32
H35 H35
H35A H35A
H34 H34
H34A H34A
H33 H33
H33A H33A
HN23 HN23
H24 H24
H24A H24A
H26 H26
H27 H27
H28 H28
H30 H30