Atom Nomenclature for 91B

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 91B

Atom Name (V3) Atom Name (V2)
C11 C11
C10 C10
C12 C12
C8 C8
C9 C9
C7 C7
C3 C3
C5 C5
C2 C2
C6 C6
C15 C15
C13 C13
N4 N4
N1 N1
N14 N14
H11 H11
H10 H10
H12 H12
H8 H8
H131 H131
H132 H132
H31C H31C
H32C H32C
H21C H21C
H22C H22C
H51C H51C
H52C H52C
H61C H61C
H62C H62C
H151 H151
H152 H152
H153 H153
H141 H141
H142 H142