Atom Nomenclature for 919

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 919

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C9 C9
N10 N10
C13 C13
C14 C14
C22 C22
N23 N23
C24 C24
C25 C25
C26 C26
C27 C27
C34 C34
C35 C35
C36 C36
C37 C37
C38 C38
C39 C39
C46 C46
C47 C47
C48 C48
N49 N49
N50 N50
N56 N56
C58 C58
N60 N60
O63 O63
O65 O65
F68 F68
C70 C70
O72 O72
N74 N74
C76 C76
C79 C79
C81 C81
C83 C83
C85 C85
H2 H2
H3 H3
H6 H6
H9 H9
H13 H13
H14 H14
H22 H22
H25 H25
H27 H27
H34 H34
H35 H35
H37 H37
H47 H47
HN56 HN56
HN60 HN60
HN74 HN74
H76 H76
H76A H76A
H76B H76B
H81 H81
H81A H81A
H81B H81B
H83 H83
H83A H83A
H83B H83B
H85 H85
H85A H85A
H85B H85B