PDB Chemical Component 907
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 907
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.414 |
1.401 |
| C1 |
C6 |
1.431 |
1.391 |
| C1 |
C7 |
1.438 |
1.478 |
| C2 |
C3 |
1.391 |
1.364 |
| C2 |
HC2 |
1.075 |
1.080 |
| C3 |
C4 |
1.371 |
1.393 |
| C3 |
HC3 |
1.081 |
1.080 |
| C4 |
C5 |
1.352 |
1.410 |
| C4 |
N3 |
1.307 |
1.376 |
| C5 |
C6 |
1.401 |
1.395 |
| C5 |
CN4 |
1.373 |
1.463 |
| C6 |
HC6 |
1.078 |
1.080 |
| C7 |
N1 |
1.326 |
1.333 |
| C7 |
N2 |
1.318 |
1.332 |
| N1 |
HH11 |
1.012 |
0.970 |
| N1 |
HH12 |
0.994 |
0.970 |
| N2 |
HH21 |
1.010 |
0.970 |
| N2 |
HH22 |
0.995 |
0.971 |
| N3 |
C8 |
1.303 |
1.376 |
| N3 |
HN3 |
0.988 |
0.969 |
| CN4 |
C8 |
1.395 |
1.356 |
| CN4 |
HCN4 |
1.088 |
1.080 |
| C8 |
C1' |
1.416 |
1.479 |
| C1' |
C2' |
1.405 |
1.396 |
| C1' |
C6' |
1.397 |
1.399 |
| C2' |
C3' |
1.417 |
1.380 |
| C2' |
HC2' |
1.078 |
1.079 |
| C3' |
CV' |
1.509 |
1.507 |
| C3' |
C4' |
1.362 |
1.385 |
| CV' |
H32' |
1.081 |
1.090 |
| CV' |
H33' |
1.078 |
1.090 |
| CV' |
H34' |
1.079 |
1.090 |
| C4' |
C5' |
1.353 |
1.383 |
| C4' |
HC4' |
1.079 |
1.079 |
| C5' |
C6' |
1.409 |
1.386 |
| C5' |
BR5' |
1.912 |
1.891 |
| C6' |
O6' |
1.386 |
1.359 |
Bond Angles for 907
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
117.8 |
120.1 |
| C2 |
C1 |
C7 |
119.4 |
120.0 |
| C1 |
C2 |
C3 |
121.7 |
120.7 |
| C1 |
C2 |
HC2 |
121.2 |
119.7 |
| C6 |
C1 |
C7 |
122.8 |
119.9 |
| C1 |
C6 |
C5 |
117.9 |
119.4 |
| C1 |
C6 |
HC6 |
121.7 |
120.3 |
| C1 |
C7 |
N1 |
121.5 |
120.0 |
| C1 |
C7 |
N2 |
117.7 |
120.1 |
| C3 |
C2 |
HC2 |
117.0 |
119.6 |
| C2 |
C3 |
C4 |
118.9 |
120.3 |
| C2 |
C3 |
HC3 |
120.8 |
119.9 |
| C4 |
C3 |
HC3 |
120.3 |
119.8 |
| C3 |
C4 |
C5 |
121.3 |
119.6 |
| C3 |
C4 |
N3 |
129.4 |
133.1 |
| C5 |
C4 |
N3 |
109.3 |
107.3 |
| C4 |
C5 |
C6 |
122.3 |
120.0 |
| C4 |
C5 |
CN4 |
106.5 |
106.3 |
| C4 |
N3 |
C8 |
110.6 |
109.9 |
| C4 |
N3 |
HN3 |
127.2 |
125.0 |
| C6 |
C5 |
CN4 |
131.2 |
133.7 |
| C5 |
C6 |
HC6 |
120.3 |
120.3 |
| C5 |
CN4 |
C8 |
106.2 |
106.8 |
| C5 |
CN4 |
HCN4 |
126.6 |
126.6 |
| N1 |
C7 |
N2 |
120.8 |
120.0 |
| C7 |
N1 |
HH11 |
119.2 |
120.0 |
| C7 |
N1 |
HH12 |
125.1 |
120.0 |
| C7 |
N2 |
HH21 |
120.4 |
120.0 |
| C7 |
N2 |
HH22 |
123.8 |
120.0 |
| HH11 |
N1 |
HH12 |
115.6 |
120.0 |
| HH21 |
N2 |
HH22 |
115.8 |
120.0 |
| C8 |
N3 |
HN3 |
122.3 |
125.1 |
| N3 |
C8 |
CN4 |
107.4 |
109.6 |
| N3 |
C8 |
C1' |
124.3 |
125.2 |
| C8 |
CN4 |
HCN4 |
127.3 |
126.6 |
| CN4 |
C8 |
C1' |
128.3 |
125.2 |
| C8 |
C1' |
C2' |
120.7 |
120.1 |
| C8 |
C1' |
C6' |
121.6 |
120.2 |
| C2' |
C1' |
C6' |
117.7 |
119.7 |
| C1' |
C2' |
C3' |
120.6 |
119.9 |
| C1' |
C2' |
HC2' |
119.6 |
120.0 |
| C1' |
C6' |
C5' |
118.9 |
119.7 |
| C1' |
C6' |
O6' |
121.2 |
120.2 |
| C3' |
C2' |
HC2' |
119.8 |
120.1 |
| C2' |
C3' |
CV' |
122.5 |
119.9 |
| C2' |
C3' |
C4' |
121.0 |
120.3 |
| CV' |
C3' |
C4' |
116.5 |
119.9 |
| C3' |
CV' |
H32' |
108.5 |
109.4 |
| C3' |
CV' |
H33' |
109.3 |
109.5 |
| C3' |
CV' |
H34' |
108.6 |
109.5 |
| C3' |
C4' |
C5' |
118.2 |
120.3 |
| C3' |
C4' |
HC4' |
121.8 |
119.8 |
| H32' |
CV' |
H33' |
109.9 |
109.4 |
| H32' |
CV' |
H34' |
110.2 |
109.5 |
| H33' |
CV' |
H34' |
110.3 |
109.5 |
| C5' |
C4' |
HC4' |
120.0 |
119.9 |
| C4' |
C5' |
C6' |
123.6 |
120.1 |
| C4' |
C5' |
BR5' |
114.3 |
119.9 |
| C6' |
C5' |
BR5' |
122.1 |
120.0 |
| C5' |
C6' |
O6' |
119.9 |
120.1 |
Torsion Angles for 907
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
C7 |
179.8 |
180.0 |
| C2 |
C1 |
C6 |
C5 |
359.7 |
0.0 |
| C2 |
C1 |
C6 |
HC6 |
179.6 |
180.0 |
| C2 |
C1 |
C7 |
N1 |
179.9 |
360.0 |
| C2 |
C1 |
C7 |
N2 |
360.0 |
180.0 |
| C3 |
C2 |
C1 |
HC2 |
180.4 |
179.9 |
| C1 |
C2 |
C3 |
C4 |
0.2 |
0.1 |
| C1 |
C2 |
C3 |
HC3 |
180.1 |
180.0 |
| C2 |
C1 |
C6 |
C7 |
180.2 |
180.0 |
| C6 |
C1 |
C2 |
C3 |
0.3 |
359.9 |
| C6 |
C1 |
C2 |
HC2 |
179.9 |
180.0 |
| C6 |
C1 |
C7 |
N1 |
0.1 |
180.0 |
| C6 |
C1 |
C7 |
N2 |
180.2 |
360.0 |
| C4 |
C5 |
C6 |
C1 |
359.9 |
360.0 |
| C1 |
C6 |
C5 |
CN4 |
180.8 |
180.3 |
| C5 |
C6 |
C1 |
HC6 |
180.0 |
180.0 |
| C2 |
C1 |
C7 |
C6 |
179.8 |
180.0 |
| C7 |
C1 |
C2 |
C3 |
180.5 |
179.9 |
| C7 |
C1 |
C2 |
HC2 |
0.1 |
0.0 |
| C7 |
C1 |
C6 |
C5 |
179.4 |
180.0 |
| C7 |
C1 |
C6 |
HC6 |
359.4 |
360.0 |
| N1 |
C7 |
C1 |
N2 |
179.9 |
180.0 |
| C1 |
C7 |
N1 |
HH11 |
357.0 |
360.0 |
| C1 |
C7 |
N1 |
HH12 |
179.0 |
180.0 |
| C1 |
C7 |
N2 |
HH21 |
0.2 |
180.0 |
| C1 |
C7 |
N2 |
HH22 |
177.8 |
0.0 |
| C3 |
C2 |
C1 |
C6 |
0.3 |
359.9 |
| C3 |
C2 |
C1 |
C7 |
180.5 |
179.9 |
| C1 |
C2 |
C3 |
HC2 |
179.7 |
180.1 |
| C4 |
C3 |
C2 |
HC3 |
180.2 |
180.1 |
| C2 |
C3 |
C4 |
C5 |
359.3 |
359.9 |
| C2 |
C3 |
C4 |
N3 |
179.4 |
180.0 |
| HC2 |
C2 |
C1 |
C6 |
179.9 |
180.0 |
| HC2 |
C2 |
C1 |
C7 |
0.1 |
0.0 |
| C1 |
C2 |
HC2 |
C3 |
180.3 |
179.9 |
| HC2 |
C2 |
C3 |
C4 |
180.6 |
180.0 |
| HC2 |
C2 |
C3 |
HC3 |
0.4 |
359.9 |
| C4 |
C3 |
C2 |
HC2 |
180.6 |
180.0 |
| C2 |
C3 |
C4 |
HC3 |
179.8 |
179.9 |
| C5 |
C4 |
C3 |
N3 |
179.9 |
180.0 |
| C3 |
C4 |
C5 |
C6 |
0.7 |
0.0 |
| C3 |
C4 |
C5 |
CN4 |
179.9 |
179.8 |
| C3 |
C4 |
N3 |
C8 |
180.3 |
179.9 |
| C3 |
C4 |
N3 |
HN3 |
359.8 |
0.0 |
| HC3 |
C3 |
C2 |
HC2 |
0.4 |
359.9 |
| C2 |
C3 |
HC3 |
C4 |
180.2 |
180.1 |
| HC3 |
C3 |
C4 |
C5 |
179.4 |
180.0 |
| HC3 |
C3 |
C4 |
N3 |
359.5 |
0.0 |
| C1 |
C6 |
C5 |
C4 |
359.9 |
360.0 |
| C5 |
C4 |
C3 |
HC3 |
179.4 |
180.0 |
| C3 |
C4 |
C5 |
N3 |
180.1 |
180.0 |
| C5 |
C4 |
N3 |
C8 |
0.4 |
360.0 |
| C5 |
C4 |
N3 |
HN3 |
179.8 |
180.0 |
| C6 |
C5 |
C4 |
CN4 |
180.7 |
180.2 |
| C4 |
C5 |
C6 |
HC6 |
179.9 |
180.0 |
| C4 |
C5 |
CN4 |
C8 |
359.8 |
0.4 |
| C4 |
C5 |
CN4 |
HCN4 |
180.1 |
180.3 |
| N3 |
C4 |
C3 |
HC3 |
359.5 |
0.0 |
| C3 |
C4 |
N3 |
C5 |
179.9 |
180.0 |
| N3 |
C4 |
C5 |
C6 |
180.6 |
180.0 |
| N3 |
C4 |
C5 |
CN4 |
359.9 |
359.8 |
| C8 |
N3 |
C4 |
HN3 |
180.6 |
179.9 |
| C4 |
N3 |
C8 |
CN4 |
359.5 |
0.3 |
| C4 |
N3 |
C8 |
C1' |
177.3 |
180.0 |
| C5 |
C6 |
C1 |
C7 |
179.4 |
180.0 |
| C1 |
C6 |
C5 |
HC6 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
N3 |
180.6 |
180.0 |
| C4 |
C5 |
C6 |
CN4 |
179.1 |
179.7 |
| C6 |
C5 |
CN4 |
C8 |
179.0 |
180.1 |
| C6 |
C5 |
CN4 |
HCN4 |
359.3 |
0.0 |
| CN4 |
C5 |
C4 |
N3 |
359.9 |
359.8 |
| C4 |
C5 |
CN4 |
C6 |
180.8 |
180.3 |
| CN4 |
C5 |
C6 |
HC6 |
0.8 |
0.3 |
| N3 |
C8 |
CN4 |
C5 |
0.4 |
359.6 |
| C8 |
CN4 |
C5 |
HCN4 |
179.8 |
180.1 |
| C5 |
CN4 |
C8 |
C1' |
182.7 |
179.9 |
| HC6 |
C6 |
C1 |
C7 |
359.4 |
360.0 |
| C1 |
C6 |
HC6 |
C5 |
180.0 |
180.0 |
| HC6 |
C6 |
C5 |
CN4 |
0.8 |
0.3 |
| C1 |
C7 |
N1 |
N2 |
180.1 |
180.0 |
| N1 |
C7 |
N2 |
HH21 |
180.2 |
360.0 |
| N1 |
C7 |
N2 |
HH22 |
357.9 |
180.0 |
| HH11 |
N1 |
C7 |
HH12 |
178.0 |
180.0 |
| C1 |
C7 |
N2 |
N1 |
179.9 |
180.0 |
| N2 |
C7 |
N1 |
HH11 |
176.9 |
180.0 |
| N2 |
C7 |
N1 |
HH12 |
358.9 |
0.0 |
| HH21 |
N2 |
C7 |
HH22 |
182.3 |
180.0 |
| HH11 |
N1 |
C7 |
N2 |
176.9 |
180.0 |
| C7 |
N1 |
HH11 |
HH12 |
181.8 |
180.0 |
| HH12 |
N1 |
C7 |
N2 |
358.9 |
0.0 |
| C7 |
N1 |
HH12 |
HH11 |
178.1 |
180.0 |
| C7 |
N2 |
HH21 |
HH22 |
177.9 |
180.0 |
| C7 |
N2 |
HH22 |
HH21 |
182.2 |
180.0 |
| C4 |
N3 |
C8 |
HN3 |
179.5 |
180.1 |
| C5 |
CN4 |
C8 |
N3 |
0.4 |
359.6 |
| N3 |
C8 |
CN4 |
HCN4 |
180.1 |
179.7 |
| CN4 |
C8 |
N3 |
C1' |
182.2 |
180.3 |
| N3 |
C8 |
C1' |
C2' |
188.5 |
320.3 |
| N3 |
C8 |
C1' |
C6' |
8.1 |
140.1 |
| C4 |
N3 |
HN3 |
C8 |
180.6 |
179.9 |
| HN3 |
N3 |
C8 |
CN4 |
180.0 |
180.2 |
| HN3 |
N3 |
C8 |
C1' |
357.8 |
359.9 |
| C5 |
CN4 |
C8 |
HCN4 |
180.2 |
179.9 |
| CN4 |
C8 |
N3 |
HN3 |
180.0 |
180.2 |
| N3 |
C8 |
CN4 |
C1' |
177.7 |
179.7 |
| CN4 |
C8 |
C1' |
C2' |
5.8 |
139.9 |
| CN4 |
C8 |
C1' |
C6' |
185.4 |
319.7 |
| C5 |
CN4 |
HCN4 |
C8 |
179.7 |
180.1 |
| HCN4 |
CN4 |
C8 |
C1' |
2.5 |
360.0 |
| C1' |
C8 |
N3 |
HN3 |
357.8 |
359.9 |
| N3 |
C8 |
C1' |
CN4 |
182.7 |
180.4 |
| C1' |
C8 |
CN4 |
HCN4 |
2.5 |
360.0 |
| C2' |
C1' |
C8 |
C6' |
180.3 |
180.2 |
| C8 |
C1' |
C2' |
C3' |
179.6 |
180.3 |
| C8 |
C1' |
C2' |
HC2' |
359.5 |
359.8 |
| C8 |
C1' |
C6' |
C5' |
180.5 |
180.0 |
| C8 |
C1' |
C6' |
O6' |
0.9 |
360.0 |
| C8 |
C1' |
C2' |
C6' |
179.7 |
179.8 |
| C2' |
C1' |
C6' |
C5' |
0.1 |
359.8 |
| C2' |
C1' |
C6' |
O6' |
180.6 |
179.7 |
| C3' |
C2' |
C1' |
HC2' |
180.1 |
180.5 |
| C1' |
C2' |
C3' |
CV' |
180.5 |
179.8 |
| C1' |
C2' |
C3' |
C4' |
0.0 |
359.4 |
| C8 |
C1' |
C6' |
C2' |
180.3 |
180.2 |
| C6' |
C1' |
C2' |
C3' |
360.0 |
0.5 |
| C6' |
C1' |
C2' |
HC2' |
179.9 |
180.0 |
| C4' |
C5' |
C6' |
C1' |
359.7 |
360.0 |
| C1' |
C6' |
C5' |
BR5' |
178.7 |
180.0 |
| C5' |
C6' |
C1' |
O6' |
179.6 |
180.0 |
| C3' |
C2' |
C1' |
C6' |
360.0 |
0.5 |
| C1' |
C2' |
C3' |
HC2' |
179.9 |
179.5 |
| CV' |
C3' |
C2' |
C4' |
180.5 |
180.4 |
| C2' |
C3' |
CV' |
H32' |
229.2 |
269.7 |
| C2' |
C3' |
CV' |
H33' |
349.1 |
29.6 |
| C2' |
C3' |
CV' |
H34' |
109.4 |
149.7 |
| C2' |
C3' |
C4' |
C5' |
359.9 |
0.4 |
| C2' |
C3' |
C4' |
HC4' |
179.9 |
180.3 |
| HC2' |
C2' |
C1' |
C6' |
179.9 |
180.0 |
| C1' |
C2' |
HC2' |
C3' |
180.1 |
180.5 |
| HC2' |
C2' |
C3' |
CV' |
0.6 |
0.3 |
| HC2' |
C2' |
C3' |
C4' |
180.1 |
179.9 |
| CV' |
C3' |
C2' |
HC2' |
0.6 |
0.3 |
| C2' |
C3' |
CV' |
C4' |
179.5 |
179.6 |
| CV' |
C3' |
C4' |
C5' |
179.4 |
180.0 |
| CV' |
C3' |
C4' |
HC4' |
359.4 |
359.9 |
| H32' |
CV' |
C3' |
H33' |
240.2 |
240.1 |
| H32' |
CV' |
C3' |
H34' |
119.9 |
120.0 |
| H33' |
CV' |
C3' |
H34' |
239.7 |
239.9 |
| C4' |
C3' |
C2' |
HC2' |
180.1 |
179.9 |
| C2' |
C3' |
C4' |
CV' |
180.4 |
180.4 |
| C4' |
C3' |
CV' |
H32' |
49.7 |
90.1 |
| C4' |
C3' |
CV' |
H33' |
169.5 |
210.0 |
| C4' |
C3' |
CV' |
H34' |
289.8 |
330.1 |
| C5' |
C4' |
C3' |
HC4' |
180.0 |
180.1 |
| C3' |
C4' |
C5' |
C6' |
0.2 |
359.9 |
| C3' |
C4' |
C5' |
BR5' |
181.2 |
180.0 |
| H32' |
CV' |
C3' |
C4' |
49.7 |
90.1 |
| C3' |
CV' |
H32' |
H33' |
119.4 |
119.9 |
| C3' |
CV' |
H32' |
H34' |
241.2 |
240.0 |
| H33' |
CV' |
H32' |
H34' |
121.8 |
120.1 |
| H33' |
CV' |
C3' |
C4' |
169.5 |
210.0 |
| C3' |
CV' |
H33' |
H32' |
241.0 |
240.1 |
| C3' |
CV' |
H33' |
H34' |
119.3 |
120.0 |
| H32' |
CV' |
H33' |
H34' |
238.3 |
239.9 |
| H34' |
CV' |
C3' |
C4' |
289.8 |
330.1 |
| C3' |
CV' |
H34' |
H32' |
118.8 |
119.9 |
| C3' |
CV' |
H34' |
H33' |
240.3 |
240.0 |
| H32' |
CV' |
H34' |
H33' |
121.5 |
120.0 |
| C1' |
C6' |
C5' |
C4' |
359.7 |
360.0 |
| C3' |
C4' |
C5' |
HC4' |
180.0 |
179.9 |
| C6' |
C5' |
C4' |
BR5' |
179.0 |
180.0 |
| C4' |
C5' |
C6' |
O6' |
179.3 |
180.0 |
| C3' |
C4' |
HC4' |
C5' |
180.0 |
180.1 |
| HC4' |
C4' |
C5' |
C6' |
180.2 |
180.0 |
| HC4' |
C4' |
C5' |
BR5' |
1.2 |
0.0 |
| C1' |
C6' |
C5' |
O6' |
180.4 |
180.0 |
| C6' |
C5' |
C4' |
HC4' |
180.2 |
180.0 |
| C4' |
C5' |
C6' |
BR5' |
181.1 |
180.0 |
| BR5' |
C5' |
C4' |
HC4' |
1.2 |
0.0 |
| C4' |
C5' |
BR5' |
C6' |
179.0 |
180.0 |
| BR5' |
C5' |
C6' |
O6' |
358.3 |
0.0 |
| C1' |
C6' |
O6' |
C5' |
179.6 |
180.0 |
| O6' |
C6' |
C5' |
BR5' |
358.3 |
0.0 |