Atom Nomenclature for 901

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 901

Atom Name (V3) Atom Name (V2)
O6 O6
C24 C24
O7 O7
C8 C8
O5 O5
N4 N4
C26 C26
C27 C27
C28 C28
C29 C29
C30 C30
C25 C25
C31 C31
O9 O9
O10 O10
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C1 C1
C32 C32
C33 C33
C7 C7
C9 C9
N1 N1
C10 C10
O4 O4
C23 C23
C11 C11
O8 O8
N2 N2
C12 C12
C13 C13
C15 C15
C14 C14
C16 C16
O1 O1
N3 N3
C17 C17
C22 C22
O2 O2
O3 O3
C18 C18
C34 C34
S1 S1
C35 C35
HO6 HO6
H27 H27
H28 H28
H29 H29
H30 H30
H10 H10
H3 H3
H4 H4
H6 H6
H321 1H32
H322 2H32
H331 1H33
H332 2H33
H333 3H33
H71 1H7
H72 2H7
H9 H9
HN1 HN1
H231 1H23
H232 2H23
H233 3H23
HN2 HN2
H121 1H12
H122 2H12
H131 1H13
H132 2H13
H151 1H15
H152 2H15
H141 1H14
H142 2H14
HN3 HN3
H17 H17
HO3 HO3
H181 1H18
H182 2H18
H341 1H34
H342 2H34
H351 1H35
H352 2H35
H353 3H35