Atom Nomenclature for 8ZK

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 8ZK

Atom Name (V3) Atom Name (V2)
CAU C1
CAV C2
NAW N1
CAX C3
CAY C4
CAT C5
NAS N2
CAR C6
OAZ O1
CAQ C7
CBA C8
CAP C9
CAM C10
CAN C11
CAO C12
CAL C13
CAK C14
NAJ N3
CAI C15
SBB S1
NAH N4
CAG C16
CAF C17
CAE C18
OBC O2
NAD N5
CAC C19
CAB C20
CL CL1
CBH C21
CBG C22
CBF C23
CBD C24
CBE C25
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29