Atom Nomenclature for 8Z8

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 8Z8

Atom Name (V3) Atom Name (V2)
CAA C1
CAB C2
CAD C3
CAF C4
CAI C5
CAJ C6
CAK C7
CAL C8
CAM C9
CAN C10
CAO C11
CAP C12
CAQ C13
CAU C14
CAV C15
CAX C16
CAY C17
CAZ C18
CBB C19
FAR F1
FAS F2
FAT F3
NAC N1
NAE N2
NAH N3
NBA N4
NBC N5
OAW O1
CL1 CL1
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17