Atom Nomenclature for 8XQ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 8XQ

Atom Name (V3) Atom Name (V2)
OAA OAA
OAB OAB
OAC OAC
CAD CAD
CAE CAE
CAF CAF
CAG CAG
CAH CAH
NAI NAI
CAJ CAJ
CAK CAK
CAL CAL
CAM CAM
CAN CAN
HOAA HOAA
HOAC HOAC
HAD HAD
HAE HAE
HAF HAF
HAG HAG
HAH HAH