Atom Nomenclature for 8W2

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 8W2

Atom Name (V3) Atom Name (V2)
CAJ C1
CBA C2
CAU C3
CL1 CL1
CAH C4
CAT C5
CL2 CL2
CAI C6
CAZ C7
NAR N1
CAV C8
CAN C9
NAP N2
CAL C10
CAK C11
CAM C12
NAQ N3
CAW C13
NAS N4
CAY C14
CAF C15
CAD C16
CAE C17
CAG C18
CBB C19
CAX C20
OAA O1
NAO N5
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20