Atom Nomenclature for 8VU

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 8VU

Atom Name (V3) Atom Name (V2)
C10 C1
C13 C2
C17 C3
C26 C4
C28 C5
C01 C6
C02 C7
C03 C8
C04 C9
C05 C10
C06 C11
C07 C12
C08 C13
C09 C14
N11 N1
O12 O1
C14 C15
N15 N2
C16 C16
O18 O2
N19 N3
F20 F1
F21 F2
F22 F3
C23 C17
O24 O3
C25 C18
C27 C19
H131 H1
H172 H2
H171 H3
H3 H4
H1 H5
H2 H6
H5 H7
H6 H8
H4 H9
H021 H10
H051 H11
H072 H12
H071 H13
H7 H14
H092 H15
H091 H16
H8 H17
H161 H18
H162 H19
H10 H20
H9 H21
H231 H23
H232 H24
H14 H25
H12 H26
H13 H27