PDB Chemical Component 8VJ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 8VJ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C29 N28 1.473 1.469
N28 C30 1.470 1.469
N28 C27 1.473 1.470
C27 C24 1.519 1.507
C26 C25 1.389 1.382
C26 C21 1.392 1.386
C25 C24 1.392 1.382
C24 C23 1.397 1.383
C23 C22 1.392 1.381
C22 C21 1.396 1.388
C21 O12 1.370 1.360
O12 C11 1.421 1.429
C11 C08 1.505 1.507
C10 C09 1.394 1.405
C10 C05 1.400 1.417
C10 N01 1.363 1.338
C09 C08 1.394 1.361
C08 C07 1.387 1.393
C07 C06 1.386 1.362
C06 C05 1.386 1.403
C05 C04 1.383 1.410
C04 C03 1.384 1.363
C03 C02 1.394 1.402
C02 N02 1.355 1.387
C02 N01 1.352 1.317
C29 H291 1.100 1.090
C29 H292 1.100 1.089
C29 H293 1.100 1.090
C30 H301 1.100 1.090
C30 H302 1.100 1.090
C30 H303 1.100 1.089
C27 H271 1.100 1.090
C27 H272 1.100 1.090
C26 H26 1.080 1.080
C25 H25 1.080 1.080
C23 H23 1.080 1.080
C22 H22 1.080 1.080
C11 H111 1.100 1.090
C11 H112 1.100 1.090
C09 H09 1.080 1.080
C07 H07 1.080 1.080
C06 H06 1.080 1.080
C04 H04 1.080 1.080
C03 H03 1.081 1.079
N02 H021 1.000 0.971
N02 H022 1.000 0.969

Bond Angles for 8VJ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C29 N28 C30 109.0 111.0
C29 N28 C27 109.4 111.0
N28 C29 H291 109.5 109.5
N28 C29 H292 109.4 109.5
N28 C29 H293 109.5 109.5
C30 N28 C27 109.7 111.0
N28 C30 H301 109.5 109.5
N28 C30 H302 109.5 109.5
N28 C30 H303 109.4 109.5
N28 C27 C24 112.9 109.5
N28 C27 H271 108.6 109.4
N28 C27 H272 108.6 109.5
C27 C24 C25 118.2 120.0
C27 C24 C23 121.8 119.9
C24 C27 H271 108.6 109.5
C24 C27 H272 108.6 109.5
C25 C26 C21 119.8 120.0
C26 C25 C24 120.2 120.0
C25 C26 H26 120.1 120.0
C26 C25 H25 119.9 120.0
C26 C21 C22 120.3 119.9
C26 C21 O12 119.5 120.0
C21 C26 H26 120.1 120.0
C25 C24 C23 120.0 120.1
C24 C25 H25 119.9 120.0
C24 C23 C22 119.9 120.1
C24 C23 H23 120.1 120.0
C23 C22 C21 119.8 119.9
C22 C23 H23 120.1 120.0
C23 C22 H22 120.1 120.0
C22 C21 O12 120.2 120.0
C21 C22 H22 120.1 120.1
C21 O12 C11 120.0 117.0
O12 C11 C08 108.3 109.5
O12 C11 H111 109.8 109.5
O12 C11 H112 109.7 109.4
C11 C08 C09 120.7 119.5
C11 C08 C07 118.8 119.5
C08 C11 H111 109.8 109.5
C08 C11 H112 109.8 109.5
C09 C10 C05 119.0 119.1
C09 C10 N01 120.3 121.0
C10 C09 C08 120.0 119.8
C10 C09 H09 120.0 120.1
C05 C10 N01 120.7 119.9
C10 C05 C06 120.6 119.6
C10 C05 C04 120.1 119.1
C10 N01 C02 119.9 121.2
C09 C08 C07 120.6 121.0
C08 C09 H09 120.0 120.1
C08 C07 C06 119.7 120.8
C08 C07 H07 120.2 119.6
C07 C06 C05 120.2 119.7
C06 C07 H07 120.2 119.6
C07 C06 H06 119.9 120.1
C06 C05 C04 119.3 121.3
C05 C06 H06 119.9 120.2
C05 C04 C03 117.8 118.3
C05 C04 H04 121.1 120.8
C04 C03 C02 121.3 119.9
C03 C04 H04 121.1 120.9
C04 C03 H03 119.4 120.1
C03 C02 N02 118.5 119.3
C03 C02 N01 120.1 121.6
C02 C03 H03 119.4 120.1
N02 C02 N01 121.4 119.2
C02 N02 H021 109.5 120.0
C02 N02 H022 109.5 120.1
H291 C29 H292 109.4 109.5
H291 C29 H293 109.5 109.4
H292 C29 H293 109.5 109.5
H301 C30 H302 109.4 109.5
H301 C30 H303 109.5 109.5
H302 C30 H303 109.5 109.5
H271 C27 H272 109.5 109.4
H111 C11 H112 109.5 109.4
H021 N02 H022 109.5 120.0

Torsion Angles for 8VJ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C30 N28 C29 C27 240.0 236.0
C29 N28 C30 H301 180.0 60.0
C29 N28 C30 H302 300.0 180.0
C29 N28 C30 H303 60.0 300.0
C29 N28 C27 C24 137.9 170.0
C29 N28 C27 H271 258.4 290.0
C29 N28 C27 H272 17.4 49.9
H291 C29 N28 H292 240.0 240.0
H291 C29 N28 H293 120.0 119.9
H292 C29 N28 H293 240.0 239.9
C29 N28 C30 C27 119.7 124.0
C30 N28 C29 H291 180.0 56.0
C30 N28 C29 H292 300.0 176.0
C30 N28 C29 H293 60.0 296.1
C30 N28 C27 C24 257.4 294.0
C30 N28 C27 H271 17.9 54.0
C30 N28 C27 H272 136.9 173.9
H301 C30 N28 H302 240.0 240.0
H301 C30 N28 H303 120.0 120.0
H302 C30 N28 H303 240.0 240.0
C29 N28 C27 C30 240.5 236.0
C27 N28 C29 H291 300.0 180.0
C27 N28 C29 H292 60.0 300.0
C27 N28 C29 H293 179.9 60.1
C27 N28 C30 H301 60.3 296.1
C27 N28 C30 H302 180.3 56.0
C27 N28 C30 H303 300.3 176.0
N28 C27 C24 C25 207.5 90.0
N28 C27 C24 C23 27.3 269.9
C24 C27 N28 H271 239.5 240.0
C24 C27 N28 H272 120.5 120.1
H271 C27 N28 H272 241.0 240.1
N28 C27 C24 H271 120.5 120.0
N28 C27 C24 H272 239.5 239.9
C26 C25 C24 C27 179.9 180.0
C25 C24 C27 C23 180.1 180.0
C27 C24 C25 H25 360.0 359.9
C27 C24 C23 C22 180.3 180.0
C27 C24 C23 H23 0.3 0.1
H271 C27 C24 H272 119.0 120.0
C27 C24 C25 C26 179.9 180.0
C25 C26 C21 C22 0.1 0.0
C25 C26 C21 O12 179.8 180.0
C21 C26 C25 H26 180.0 180.3
C26 C25 C24 C23 0.1 360.0
C24 C25 C26 H25 180.0 180.0
C21 C26 C25 C24 359.8 0.0
C25 C26 C21 H26 180.0 179.7
C21 C26 C25 H25 179.8 180.0
C23 C22 C21 C26 0.2 359.9
C22 C21 C26 O12 180.2 180.0
C26 C21 C22 H22 180.1 180.1
C26 C21 O12 C11 7.2 180.0
C27 C24 C25 C23 179.9 180.0
C25 C24 C27 H271 87.0 330.0
C25 C24 C27 H272 328.0 210.0
C24 C25 C26 C21 359.8 0.0
C24 C25 C26 H26 179.8 179.7
C26 C25 C24 H25 180.0 180.0
C25 C24 C23 C22 0.2 360.0
C25 C24 C23 H23 180.2 180.0
C27 C24 C23 C25 180.1 180.0
C23 C24 C27 H271 266.8 150.0
C23 C24 C27 H272 147.8 30.0
C23 C24 C25 H25 180.1 180.0
C24 C23 C22 C21 359.7 0.1
C22 C23 C24 H23 180.0 179.9
C24 C23 C22 H22 179.8 179.9
C26 C21 C22 C23 0.2 359.9
C24 C23 C22 H23 180.0 180.1
C23 C22 C21 O12 180.4 180.0
C21 C22 C23 H22 180.0 180.1
C26 C21 C22 O12 179.8 180.0
C22 C21 C26 H26 180.1 180.3
C21 C22 C23 H23 179.7 180.0
C23 C22 C21 H22 180.0 179.9
C22 C21 O12 C11 187.0 359.9
C26 C21 O12 C22 180.2 180.0
O12 C21 C26 H26 359.8 0.3
O12 C21 C22 H22 0.4 0.1
C21 O12 C11 C08 181.3 180.0
C21 O12 C11 H111 301.1 300.0
C21 O12 C11 H112 61.5 60.0
O12 C11 C08 C09 303.5 90.0
O12 C11 C08 C07 123.6 270.0
C08 C11 O12 H111 240.2 240.0
C08 C11 O12 H112 119.8 120.0
H111 C11 O12 H112 239.7 240.0
O12 C11 C08 H111 119.8 120.1
O12 C11 C08 H112 240.2 240.0
C10 C09 C08 C11 179.8 180.0
C09 C08 C11 C07 179.8 180.0
C11 C08 C09 H09 359.8 0.1
C11 C08 C07 C06 180.1 180.0
C11 C08 C07 H07 0.1 0.0
H111 C11 C08 H112 120.4 120.0
C11 C08 C09 C10 179.8 180.0
C05 C10 C09 N01 180.2 180.4
C09 C10 C05 C06 359.9 359.9
C09 C10 C05 C04 180.2 180.0
C09 C10 N01 C02 180.2 179.7
C10 C09 C08 C07 359.6 0.0
C08 C09 C10 H09 180.0 180.1
C09 C10 C05 N01 179.8 179.6
C05 C10 C09 C08 0.2 0.0
C05 C10 C09 H09 180.2 180.0
C05 C10 N01 C02 360.0 359.3
C07 C06 C05 C10 0.0 0.0
C06 C05 C10 C04 179.7 180.0
C10 C05 C06 H06 180.0 180.0
C10 C05 C04 C03 0.2 360.0
C10 C05 C04 H04 180.2 179.9
C09 C10 N01 C05 180.2 180.4
N01 C10 C09 C08 180.1 179.7
N01 C10 C09 H09 0.1 359.6
N01 C10 C05 C06 180.1 180.3
N01 C10 C05 C04 0.4 0.3
C03 C02 N01 C10 359.1 0.7
N02 C02 N01 C10 179.8 180.3
C11 C08 C09 C07 180.2 180.0
C09 C08 C11 H111 183.6 329.9
C09 C08 C11 H112 63.3 210.0
C08 C09 C10 C05 0.2 0.0
C08 C09 C10 N01 180.1 179.7
C10 C09 C08 H09 180.0 179.9
C09 C08 C07 C06 0.3 359.9
C09 C08 C07 H07 180.3 180.0
C11 C08 C07 C09 179.8 180.0
C07 C08 C11 H111 3.8 149.9
C07 C08 C11 H112 243.4 29.9
C07 C08 C09 H09 179.6 180.1
C08 C07 C06 C05 359.9 0.0
C06 C07 C08 H07 180.0 180.0
C08 C07 C06 H06 179.8 180.0
C10 C05 C06 C07 0.0 0.0
C08 C07 C06 H07 180.0 180.0
C07 C06 C05 C04 179.8 180.0
C05 C06 C07 H06 180.0 180.0
C06 C05 C10 N01 180.1 180.3
C10 C05 C06 C04 180.3 180.0
C05 C06 C07 H07 179.9 180.0
C07 C06 C05 H06 180.0 180.0
C06 C05 C04 C03 180.5 180.0
C06 C05 C04 H04 0.5 359.9
C04 C05 C10 N01 0.4 0.3
C10 C05 C04 C06 179.7 180.0
C04 C05 C06 H06 359.8 0.0
C05 C04 C03 C02 358.9 0.0
C03 C04 C05 H04 180.0 180.1
C05 C04 C03 H03 178.9 180.0
C05 C04 C03 H04 180.0 179.9
C04 C03 C02 N02 180.8 180.0
C04 C03 C02 N01 1.5 359.6
C02 C03 C04 H03 180.0 180.1
C10 N01 C02 C03 359.1 0.7
C02 C03 C04 H04 178.9 180.1
C04 C03 C02 H03 180.0 179.9
N02 C02 C03 N01 179.3 180.4
C03 C02 N02 H021 180.7 359.9
C03 C02 N02 H022 300.7 180.0
C10 N01 C02 N02 179.8 180.3
C03 C02 N02 N01 180.7 179.6
N02 C02 C03 H03 0.8 0.1
H021 N02 C02 H022 240.0 179.9
C03 C02 N01 N02 179.3 180.4
N01 C02 C03 H03 181.5 179.7
N01 C02 N02 H021 360.0 180.3
N01 C02 N02 H022 120.0 0.4
H291 C29 N28 C30 180.0 56.0
H291 C29 N28 C27 300.0 180.0
N28 C29 H291 H292 120.0 120.0
N28 C29 H291 H293 240.0 240.0
H292 C29 H291 H293 120.0 120.0
H292 C29 N28 C30 300.0 176.0
H292 C29 N28 C27 60.0 300.0
N28 C29 H292 H291 240.0 240.0
N28 C29 H292 H293 120.0 120.0
H291 C29 H292 H293 240.0 240.0
H293 C29 N28 C30 60.0 296.1
H293 C29 N28 C27 179.9 60.1
N28 C29 H293 H291 120.1 120.0
N28 C29 H293 H292 240.0 240.0
H291 C29 H293 H292 120.0 120.0
H301 C30 N28 C27 60.3 296.1
N28 C30 H301 H302 120.0 120.0
N28 C30 H301 H303 240.0 240.0
H302 C30 H301 H303 120.0 120.0
H302 C30 N28 C27 180.3 56.0
N28 C30 H302 H301 240.0 240.0
N28 C30 H302 H303 120.0 120.0
H301 C30 H302 H303 240.0 239.9
H303 C30 N28 C27 300.3 176.0
N28 C30 H303 H301 120.0 120.0
N28 C30 H303 H302 240.0 240.0
H301 C30 H303 H302 120.0 120.0
N28 C27 H271 C24 236.9 240.0
N28 C27 H271 H272 118.4 120.0
H271 C27 C24 C25 87.0 330.0
H271 C27 C24 C23 266.8 150.0
C24 C27 H271 H272 241.5 239.9
N28 C27 H272 C24 123.1 120.1
N28 C27 H272 H271 241.5 240.1
H272 C27 C24 C25 328.0 210.0
H272 C27 C24 C23 147.8 30.0
C24 C27 H272 H271 118.4 120.0
C25 C26 H26 C21 180.0 180.3
H26 C26 C25 C24 179.8 179.7
H26 C26 C25 H25 359.8 359.7
H26 C26 C21 C22 180.1 180.3
H26 C26 C21 O12 359.8 0.3
H25 C25 C26 C21 179.8 180.0
C26 C25 H25 C24 180.0 180.0
H25 C25 C26 H26 359.8 359.7
H25 C25 C24 C23 180.1 180.0
C24 C23 H23 C22 180.0 179.9
H23 C23 C22 C21 179.7 180.0
H23 C23 C22 H22 359.8 359.8
C23 C22 H22 C21 180.0 180.1
H22 C22 C23 H23 359.8 359.8
H22 C22 C21 O12 0.4 0.1
O12 C11 H111 C08 241.0 240.0
O12 C11 H111 H112 120.5 120.0
H111 C11 C08 C09 183.6 329.9
H111 C11 C08 C07 3.8 149.9
C08 C11 H111 H112 239.5 240.0
O12 C11 H112 C08 118.9 120.0
O12 C11 H112 H111 239.5 240.0
H112 C11 C08 C09 63.3 210.0
H112 C11 C08 C07 243.4 29.9
C08 C11 H112 H111 120.5 120.0
H09 C09 C10 C05 180.2 180.0
H09 C09 C10 N01 0.1 359.6
C10 C09 H09 C08 180.0 180.1
H09 C09 C08 C07 179.6 180.1
C08 C07 H07 C06 180.0 180.0
H07 C07 C06 C05 179.9 180.0
H07 C07 C06 H06 359.9 360.0
C07 C06 H06 C05 180.0 180.0
H06 C06 C07 H07 359.9 360.0
H06 C06 C05 C04 359.8 0.0
C05 C04 H04 C03 180.0 180.1
H04 C04 C03 C02 178.9 180.1
H04 C04 C03 H03 358.9 0.0
C04 C03 H03 C02 180.0 180.1
H03 C03 C04 H04 358.9 0.0
H03 C03 C02 N02 0.8 0.1
H03 C03 C02 N01 181.5 179.7
H021 N02 C02 N01 360.0 180.3
C02 N02 H021 H022 120.0 180.1
H022 N02 C02 N01 120.0 0.4
C02 N02 H022 H021 240.0 179.9