PDB Chemical Component 8V8
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 8V8
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N13 |
C12 |
1.375 |
1.342 |
| N13 |
C14 |
1.291 |
1.304 |
| C12 |
C11 |
1.347 |
1.358 |
| C14 |
C16 |
1.481 |
1.506 |
| C14 |
O15 |
1.372 |
1.340 |
| C11 |
O15 |
1.381 |
1.350 |
| C11 |
C1 |
1.464 |
1.479 |
| C1 |
C6 |
1.393 |
1.396 |
| C1 |
C2 |
1.394 |
1.395 |
| C6 |
C5 |
1.383 |
1.380 |
| C2 |
C3 |
1.386 |
1.380 |
| C5 |
C4 |
1.387 |
1.384 |
| C3 |
C4 |
1.389 |
1.384 |
| C4 |
S7 |
1.769 |
1.762 |
| N10 |
S7 |
1.608 |
1.656 |
| O9 |
S7 |
1.440 |
1.421 |
| S7 |
O8 |
1.435 |
1.421 |
| C2 |
H1 |
1.080 |
1.080 |
| C6 |
H2 |
1.080 |
1.079 |
| C5 |
H3 |
1.080 |
1.081 |
| C3 |
H4 |
1.081 |
1.080 |
| C12 |
H6 |
1.080 |
1.080 |
| C16 |
H11 |
1.100 |
1.089 |
| C16 |
H12 |
1.100 |
1.090 |
| C16 |
H13 |
1.100 |
1.090 |
| N10 |
H14 |
1.000 |
0.970 |
| N10 |
H15 |
1.000 |
0.970 |
Bond Angles for 8V8
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N13 |
C12 |
H6 |
124.6 |
126.2 |
| N13 |
C14 |
C16 |
128.2 |
125.5 |
| N13 |
C14 |
O15 |
114.7 |
109.0 |
| C12 |
C11 |
O15 |
106.7 |
106.9 |
| O15 |
C14 |
C16 |
116.8 |
125.5 |
| C14 |
C16 |
H11 |
109.5 |
109.5 |
| C14 |
C16 |
H12 |
109.5 |
109.5 |
| C14 |
C16 |
H13 |
109.4 |
109.5 |
| C11 |
O15 |
C14 |
102.5 |
107.7 |
| C1 |
C6 |
H2 |
119.5 |
120.1 |
| C1 |
C2 |
H1 |
119.6 |
120.1 |
| C6 |
C5 |
C4 |
119.5 |
120.2 |
| C5 |
C6 |
H2 |
119.5 |
120.1 |
| C6 |
C5 |
H3 |
120.2 |
119.9 |
| C2 |
C3 |
C4 |
119.5 |
120.2 |
| C3 |
C2 |
H1 |
119.6 |
120.1 |
| C2 |
C3 |
H4 |
120.3 |
119.9 |
| C5 |
C4 |
C3 |
120.5 |
120.3 |
| C5 |
C4 |
S7 |
119.3 |
119.9 |
| C4 |
C5 |
H3 |
120.2 |
119.9 |
| C3 |
C4 |
S7 |
120.2 |
119.9 |
| C4 |
C3 |
H4 |
120.3 |
119.9 |
| C4 |
S7 |
O8 |
106.4 |
106.4 |
| H11 |
C16 |
H12 |
109.5 |
109.4 |
| H11 |
C16 |
H13 |
109.5 |
109.5 |
| H12 |
C16 |
H13 |
109.5 |
109.4 |
| H14 |
N10 |
H15 |
109.4 |
120.0 |
Torsion Angles for 8V8
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N13 |
C12 |
C11 |
O15 |
350.3 |
0.0 |
| C14 |
N13 |
C12 |
H6 |
181.2 |
180.1 |
| O15 |
C14 |
N13 |
C16 |
185.6 |
180.0 |
| N13 |
C14 |
C16 |
H11 |
360.0 |
90.0 |
| N13 |
C14 |
C16 |
H12 |
120.0 |
210.0 |
| N13 |
C14 |
C16 |
H13 |
240.0 |
330.0 |
| C11 |
O15 |
C14 |
N13 |
346.0 |
360.0 |
| C12 |
C11 |
O15 |
C14 |
13.5 |
360.0 |
| N13 |
C14 |
C16 |
O15 |
185.7 |
180.0 |
| C11 |
O15 |
C14 |
C16 |
170.9 |
180.0 |
| H11 |
C16 |
C14 |
H12 |
240.0 |
240.0 |
| H11 |
C16 |
C14 |
H13 |
120.0 |
120.0 |
| H12 |
C16 |
C14 |
H13 |
240.0 |
240.0 |
| N13 |
C14 |
O15 |
C16 |
175.0 |
180.0 |
| O15 |
C14 |
C16 |
H11 |
174.3 |
270.0 |
| O15 |
C14 |
C16 |
H12 |
294.3 |
30.0 |
| O15 |
C14 |
C16 |
H13 |
54.3 |
150.0 |
| N13 |
C14 |
O15 |
C11 |
346.0 |
360.0 |
| C11 |
C1 |
C6 |
H2 |
1.2 |
0.3 |
| C11 |
C1 |
C2 |
H1 |
359.2 |
0.3 |
| C6 |
C1 |
C2 |
H1 |
181.5 |
180.3 |
| C1 |
C6 |
C5 |
C4 |
0.3 |
0.8 |
| C5 |
C6 |
C1 |
H2 |
180.0 |
179.1 |
| C1 |
C6 |
C5 |
H3 |
180.2 |
180.9 |
| C1 |
C2 |
C3 |
C4 |
358.9 |
0.3 |
| C3 |
C2 |
C1 |
H1 |
180.0 |
179.7 |
| C1 |
C2 |
C3 |
H4 |
178.9 |
180.3 |
| C1 |
C6 |
C5 |
H2 |
180.0 |
180.9 |
| C6 |
C5 |
C4 |
C3 |
0.1 |
359.5 |
| C6 |
C5 |
C4 |
S7 |
178.2 |
179.9 |
| C4 |
C5 |
C6 |
H3 |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
H1 |
180.0 |
180.3 |
| C5 |
C4 |
C3 |
C2 |
0.3 |
360.0 |
| C2 |
C3 |
C4 |
S7 |
182.2 |
179.5 |
| C4 |
C3 |
C2 |
H4 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
H2 |
180.3 |
180.0 |
| C6 |
C5 |
C4 |
H3 |
180.0 |
180.0 |
| C2 |
C3 |
C4 |
C5 |
0.3 |
360.0 |
| C3 |
C4 |
C5 |
S7 |
181.9 |
179.5 |
| C5 |
C4 |
C3 |
H4 |
180.3 |
179.9 |
| C5 |
C4 |
S7 |
O8 |
247.3 |
203.5 |
| C4 |
C3 |
C2 |
H1 |
178.9 |
180.0 |
| C2 |
C3 |
C4 |
H4 |
180.0 |
180.0 |
| C5 |
C4 |
C3 |
S7 |
178.1 |
180.5 |
| C3 |
C4 |
C5 |
H3 |
180.1 |
179.4 |
| C3 |
C4 |
S7 |
O8 |
65.4 |
24.0 |
| C5 |
C4 |
S7 |
C3 |
181.9 |
179.5 |
| S7 |
C4 |
C5 |
H3 |
358.2 |
359.9 |
| S7 |
C4 |
C3 |
H4 |
2.2 |
359.5 |
| H1 |
C2 |
C3 |
C4 |
178.9 |
180.0 |
| H1 |
C2 |
C3 |
H4 |
358.9 |
0.0 |
| H2 |
C6 |
C5 |
C4 |
180.3 |
180.0 |
| H2 |
C6 |
C5 |
H3 |
0.2 |
0.0 |
| C6 |
C5 |
H3 |
C4 |
180.0 |
180.0 |
| H3 |
C5 |
C6 |
H2 |
0.2 |
0.0 |
| H3 |
C5 |
C4 |
C3 |
180.1 |
179.4 |
| H3 |
C5 |
C4 |
S7 |
358.2 |
359.9 |
| C2 |
C3 |
H4 |
C4 |
180.0 |
180.0 |
| H4 |
C3 |
C2 |
H1 |
358.9 |
0.0 |
| H4 |
C3 |
C4 |
S7 |
2.2 |
359.5 |
| H6 |
C12 |
C11 |
O15 |
170.2 |
179.9 |
| C14 |
C16 |
H11 |
H12 |
120.0 |
120.0 |
| C14 |
C16 |
H11 |
H13 |
240.0 |
239.9 |
| H12 |
C16 |
H11 |
H13 |
120.0 |
119.9 |
| C14 |
C16 |
H12 |
H11 |
240.0 |
240.0 |
| C14 |
C16 |
H12 |
H13 |
120.0 |
120.0 |
| H11 |
C16 |
H12 |
H13 |
240.0 |
240.1 |
| C14 |
C16 |
H13 |
H11 |
120.0 |
120.1 |
| C14 |
C16 |
H13 |
H12 |
240.0 |
240.0 |
| H11 |
C16 |
H13 |
H12 |
120.0 |
119.9 |