Atom Nomenclature for 8UZ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 8UZ

Atom Name (V3) Atom Name (V2)
O3 O1
C4 C1
C5 C2
O4 O2
C6 C3
N1 N1
C7 C4
C8 C5
N2 N2
C9 C6
O5 O3
C10 C7
O6 O4
C11 C8
C12 C9
N3 N3
C13 C10
O7 O5
C14 C11
O8 O6
C15 C12
N4 N4
O9 O7
C17 C13
C1 C14
C C15
N N5
C16 C16
C2 C17
O O8
O1 O9
C3 C18
O2 O10
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H8 H8
H9 H9
H10 H10
H11 H11
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H39 H39
H40 H40
H41 H41
H42 H42